NR_4.0_20585.5

Members (18)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8PKL\|1\|Y (rep)	Transfer RNA	mRNA, tRNA-Ala (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)	Electron microscopy	3.09	76	2024-03-06
2	9GFT\|1\|AU	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Structure of the HrpA-bound E. coli disome, Class I	Electron microscopy	3.1	76	2025-02-12
3	6ORD\|1\|QY	Transfer RNA	A-site tRNAAla(GGC) U32-A38, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site	X-ray diffraction	3.1	76	2020-06-24
4	6ORD\|1\|XY	Transfer RNA	A-site tRNAAla(GGC) U32-A38, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site	X-ray diffraction	3.1	76	2020-06-24
5	9GGR\|1\|AU	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Structure of the HrpA-bound E. coli disome, Class II	Electron microscopy	3.2	76	2025-02-12
6	6OJ2\|1\|XY	Transfer RNA	A-site tRNAAla(GGC), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-ray diffraction	3.2	76	2020-06-24
7	6OPE\|1\|QY	Transfer RNA	A-site tRNAAla(GGC) U32-A38, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site	X-ray diffraction	3.1	75	2020-06-24
8	6OPE\|1\|XY	Transfer RNA	A-site tRNAAla(GGC) U32-A38, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site	X-ray diffraction	3.1	75	2020-06-24
9	6OJ2\|1\|XW	Transfer RNA	E-site tRNAAla(GGC)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-ray diffraction	3.2	76	2020-06-24
10	8R3V\|1\|Y2	Transfer RNA	messenger RNA, tRNA-Ala (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (non-rotated disome interface)	Electron microscopy	3.28	76	2024-03-06
11	6OF6\|1\|XY	Transfer RNA	A-site tRNAAla(GGC), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-ray diffraction	3.2	75	2020-06-24
12	6OJ2\|1\|QY	Transfer RNA	A-site tRNAAla(GGC), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-ray diffraction	3.2	75	2020-06-24
13	6OJ2\|1\|QW	Transfer RNA	E-site tRNAAla(GGC)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-ray diffraction	3.2	76	2020-06-24
14	6OF6\|1\|QY	Transfer RNA	A-site tRNAAla(GGC), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-ray diffraction	3.2	75	2020-06-24
15	6OF6\|1\|QW	Transfer RNA	E-site tRNAAla(GGC)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-ray diffraction	3.2	76	2020-06-24
16	8RCL\|1\|Y2	Transfer RNA	messenger RNA, tRNA-Ala (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	Electron microscopy	3.49	76	2024-03-13
17	8RCM\|1\|Y2	Transfer RNA	messenger RNA, tRNA-Ala (A-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	Electron microscopy	3.59	76	2024-03-06
18	6OF6\|1\|XW	Transfer RNA	E-site tRNAAla(GGC)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-ray diffraction	3.2	76	2020-06-24

Release history

Release	3.378	3.379	3.380	3.381	3.382	3.383	3.384	3.385	3.386	3.387	3.388	3.389	3.390
Date	2025-03-13	2025-03-19	2025-03-26	2025-04-02	2025-04-09	2025-04-16	2025-04-23	2025-04-30	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	#NTs
1		9GFT\|1\|AU	Structure of the HrpA-bound E. coli disome, Class I	ELECTRON MICROSCOPY	3.1	76
2		9GGR\|1\|AU	Structure of the HrpA-bound E. coli disome, Class II	ELECTRON MICROSCOPY	3.2	76
3		8RCM\|1\|Y2	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	ELECTRON MICROSCOPY	3.59	76
4		8PKL\|1\|Y	Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)	ELECTRON MICROSCOPY	3.09	76
5		8R3V\|1\|Y2	Escherichia coli paused disome complex (non-rotated disome interface)	ELECTRON MICROSCOPY	3.28	76
6		8RCL\|1\|Y2	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	ELECTRON MICROSCOPY	3.49	76
7		6ORD\|1\|QY	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site	X-RAY DIFFRACTION	3.1	76
8		6ORD\|1\|XY	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site	X-RAY DIFFRACTION	3.1	76
9		6OJ2\|1\|XY	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-RAY DIFFRACTION	3.2	76
10		6OF6\|1\|XY	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-RAY DIFFRACTION	3.2	75
11		6OPE\|1\|XY	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site	X-RAY DIFFRACTION	3.1	75
12		6OPE\|1\|QY	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site	X-RAY DIFFRACTION	3.1	75
13		6OJ2\|1\|QY	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-RAY DIFFRACTION	3.2	75
14		6OF6\|1\|QY	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-RAY DIFFRACTION	3.2	75
15		6OF6\|1\|QW	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-RAY DIFFRACTION	3.2	76
16		6OJ2\|1\|QW	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-RAY DIFFRACTION	3.2	76
17		6OJ2\|1\|XW	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site	X-RAY DIFFRACTION	3.2	76
18		6OF6\|1\|XW	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site	X-RAY DIFFRACTION	3.2	76

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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