Equivalence class NR_4.0_21280.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6D9J|1|2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 1697 | 2018-06-06 |
| 2 | 5LZS|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 1697 | 2016-11-30 |
| 3 | 1VX5|1|2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | Electron microscopy | 3.5 | 0 | 2014-06-18 | ||||
| 4 | 3J74|1|S2 | 18S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | Electron microscopy | 3.5 | 1742 | 2014-06-18 | ||||
| 5 | 6MTD|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | Electron microscopy | 3.3 | 1698 | 2018-11-21 |
| 6 | 5LZV|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 1698 | 2016-11-30 |
| 7 | 6D90|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 1697 | 2018-06-06 |
| 8 | 6MTC|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | Electron microscopy | 3.4 | 1698 | 2018-11-21 |
| 9 | 6MTE|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | Electron microscopy | 3.4 | 1698 | 2018-11-21 |
| 10 | 6GZ5|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 1708 | 2018-12-05 |
| 11 | 5LZZ|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 1698 | 2016-11-30 |
| 12 | 5LZW|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 1698 | 2016-11-30 |
| 13 | 5LZX|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 1698 | 2016-11-30 |
| 14 | 6GZ3|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 1708 | 2018-12-05 |
| 15 | 6GZ4|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 1708 | 2018-12-05 |
| 16 | 5LZT|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 1698 | 2016-11-30 |
| 17 | 6MTB|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 1698 | 2018-11-21 |
| 18 | 6HCJ|1|A2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 1740 | 2018-10-17 |
| 19 | 1VX2|1|2 | 18S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | Electron microscopy | 3.9 | 0 | 2014-06-18 | ||||
| 20 | 3J73|1|S2 | 18S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex | Electron microscopy | 3.9 | 1742 | 2014-06-18 | ||||
| 21 | 5LZU|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 1698 | 2016-11-30 |
| 22 | 6HCF|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 1732 | 2018-10-17 |
| 23 | 3JAH|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 1719 | 2015-08-12 |
| 24 | 5LZY|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 1698 | 2016-11-30 |
| 25 | 5FLX|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 1708 | 2015-12-23 |
| 26 | 3JAG|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 1719 | 2015-08-12 |
| 27 | 3JAI|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 1719 | 2015-08-12 |
| 28 | 3JAN|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 1742 | 2015-08-05 |
| 29 | 3JAJ|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 1742 | 2015-08-05 |
Release history
| Release | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_21280.6 | NR_4.0_21280.5 | 3.51 | (26) 1VX2|1|2, 1VX5|1|2, 3J73|1|S2, 3J74|1|S2, 3JAG|1|9, 3JAH|1|9, 3JAI|1|9, 3JAJ|1|S2, 3JAN|1|S2, 5FLX|1|1, 5LZS|1|9, 5LZT|1|9, 5LZU|1|9, 5LZV|1|9, 5LZW|1|9, 5LZX|1|9, 5LZY|1|9, 5LZZ|1|9, 6D90|1|2, 6D9J|1|2, 6HCF|1|A1, 6HCJ|1|A2, 6MTB|1|9, 6MTC|1|9, 6MTD|1|9, 6MTE|1|9 | (3) 6GZ3|1|B1, 6GZ4|1|B1, 6GZ5|1|B1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 3JAJ|1|S2 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | |
| 2 | 3JAN|1|S2 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | |
| 3 | 3JAH|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 1719 | |
| 4 | 3JAG|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | |
| 5 | 3JAI|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | |
| 6 | 6GZ5|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 1708 | |
| 7 | 5LZS|1|9 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 1697 | |
| 8 | 5LZT|1|9 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 1698 | |
| 9 | 5LZV|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 1698 | |
| 10 | 5LZU|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 1698 | |
| 11 | 5LZW|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 1698 | |
| 12 | 5LZX|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 1698 | |
| 13 | 5LZZ|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 1698 | |
| 14 | 5LZY|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 1698 | |
| 15 | 6MTC|1|9 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 1698 | |
| 16 | 6MTB|1|9 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 1698 | |
| 17 | 6HCJ|1|A2 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 1740 | |
| 18 | 6HCF|1|A1 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 1732 | |
| 19 | 6D90|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 20 | 3J73|1|S2 | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 1742 | |
| 21 | 1VX2|1|2 | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.9 | 0 | |
| 22 | 1VX5|1|2 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.5 | 0 | |
| 23 | 3J74|1|S2 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 1742 | |
| 24 | 6D9J|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 25 | 5FLX|1|1 | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 1708 | |
| 26 | 6GZ3|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 1708 | |
| 27 | 6GZ4|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 1708 | |
| 28 | 6MTD|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 1698 | |
| 29 | 6MTE|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 1698 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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