Equivalence class NR_4.0_21756.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GNA|1|C+ 8GNA|1|J (rep) | RNA (32-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR complex | Electron microscopy | 2.8 | 2023-01-18 | |||
| 2 | 8D9G|1|C+ 8D9G|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*GP*AP*U)-3') | Candidatus Scalindua brodae | gRAMP-TPR-CHAT Non match PFS target RNA(Craspase) | Electron microscopy | 2.57 | 2023-06-14 | |||
| 3 | 7X8A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 2.8 | 2022-11-16 | |||
| 4 | 7XC7|1|C+ 7XC7|1|J | RNA (33-MER), RNA (46-mer) | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein complex | Electron microscopy | 3.1 | 2022-11-16 | |||
| 5 | 8D9F|1|C | RNA (33-MER) | Candidatus Scalindua brodae | gRAMP-TPR-CHAT (Craspase) | Electron microscopy | 2.71 | 2023-06-14 | |||
| 6 | 7X7A|1|C | RNA (33-MER) | Candidatus Scalindua brodae | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | Electron microscopy | 3.2 | 2022-11-16 | |||
| 7 | 8GU6|1|C+ 8GU6|1|J | RNA (33-MER), RNA (5'-R(P*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | Electron microscopy | 3.1 | 2023-01-18 | |||
| 8 | 7X7R|1|C+ 7X7R|1|J | RNA (36-MER), RNA (5'-R(P*AP*GP*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*G)-3') | Candidatus Scalindua brodae | Cryo-EM structure of a bacterial protein | Electron microscopy | 3.5 | 2022-11-16 | |||
| 9 | 8D9H|1|C+ 8D9H|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') | Candidatus Scalindua brodae | gRAMP-TPR-CHAT match PFS target RNA(Craspase) | Electron microscopy | 3.6 | 2023-06-14 | |||
| 10 | 8D8N|1|C+ 8D8N|1|D | RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*AP*CP*A)-3') | Candidatus Scalindua brodae | gRAMP non-match PFS target RNA | Electron microscopy | 3.6 | 2022-08-31 | |||
| 11 | 8D9E|1|C+ 8D9E|1|D | RNA (36-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*UP*A)-3') | Candidatus Scalindua brodae | gRAMP-match PFS target | Electron microscopy | 3.76 | 2023-06-14 | |||
| 12 | 8D9I|1|C+ 8D9I|1|D | RNA (35-MER), RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*A)-3') | Candidatus Scalindua brodae | gRAMP non-matching PFS-with Mg | Electron microscopy | 3.62 | 2023-06-14 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_21756.1 | NR_4.0_60445.2 | 3.287 | (7) 7X7A|1|C, 7X7R|1|C+7X7R|1|J, 7X8A|1|C, 7XC7|1|C+7XC7|1|J, 8D8N|1|C+8D8N|1|D, 8GNA|1|C+8GNA|1|J, 8GU6|1|C+8GU6|1|J | (5) 8D9E|1|C+8D9E|1|D, 8D9F|1|C, 8D9G|1|C+8D9G|1|D, 8D9H|1|C+8D9H|1|D, 8D9I|1|C+8D9I|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_21756.1 | NR_4.0_21756.2 | 3.289 | (12) 7X7A|1|C, 7X7R|1|C+7X7R|1|J, 7X8A|1|C, 7XC7|1|C+7XC7|1|J, 8D8N|1|C+8D8N|1|D, 8D9E|1|C+8D9E|1|D, 8D9F|1|C, 8D9G|1|C+8D9G|1|D, 8D9H|1|C+8D9H|1|D, 8D9I|1|C+8D9I|1|D, 8GNA|1|C+8GNA|1|J, 8GU6|1|C+8GU6|1|J | (0) | (2) 7Y8T|1|D, 7Y8Y|1|D+7Y8Y|1|E |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7X7R|1|C+ 7X7R|1|J | Cryo-EM structure of a bacterial protein | ELECTRON MICROSCOPY | 3.5 | 36 | |
| 2 | 7X7A|1|C | Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA | ELECTRON MICROSCOPY | 3.2 | 33 | |
| 3 | 7X8A|1|C | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 2.8 | 33 | |
| 4 | 8GNA|1|C+ 8GNA|1|J | Structure of the SbCas7-11-crRNA-NTR complex | ELECTRON MICROSCOPY | 2.8 | 32 | |
| 5 | 8GU6|1|C+ 8GU6|1|J | Structure of the SbCas7-11-crRNA-NTR-Csx29 complex | ELECTRON MICROSCOPY | 3.1 | 33 | |
| 6 | 7XC7|1|C+ 7XC7|1|J | Cryo-EM structure of a bacterial protein complex | ELECTRON MICROSCOPY | 3.1 | 31 | |
| 7 | 8D9G|1|C+ 8D9G|1|D | gRAMP-TPR-CHAT Non match PFS target RNA(Craspase) | ELECTRON MICROSCOPY | 2.57 | 36 | |
| 8 | 8D9I|1|C+ 8D9I|1|D | gRAMP non-matching PFS-with Mg | ELECTRON MICROSCOPY | 3.62 | 35 | |
| 9 | 8D8N|1|C+ 8D8N|1|D | gRAMP non-match PFS target RNA | ELECTRON MICROSCOPY | 3.6 | 35 | |
| 10 | 8D9H|1|C+ 8D9H|1|D | gRAMP-TPR-CHAT match PFS target RNA(Craspase) | ELECTRON MICROSCOPY | 3.6 | 36 | |
| 11 | 8D9E|1|C+ 8D9E|1|D | gRAMP-match PFS target | ELECTRON MICROSCOPY | 3.76 | 36 | |
| 12 | 8D9F|1|C | gRAMP-TPR-CHAT (Craspase) | ELECTRON MICROSCOPY | 2.71 | 33 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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