Equivalence class NR_4.0_24084.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9W8V|1|P+ 9W8V|1|T+ 9W8V|1|N (rep) | DNA (NTS, non-template strand), DNA (TS, template strand), RNA (5'-R(*UP*AP*CP*AP*AP*UP*GP*UP*UP*GP*GP*AP*AP*AP*GP*GP*AP*GP*AP*G)-3') | synthetic construct | Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the +2 position. | Electron microscopy | 2.23 | 36 | 2026-06-24 | |||
| 2 | 9W8U|1|P+ 9W8U|1|T+ 9W8U|1|N | DNA (NTS, non-template strand), DNA (TS, template strand), RNA (5'-R(*UP*AP*CP*AP*AP*UP*GP*UP*UP*GP*GP*AP*AP*AP*GP*GP*AP*GP*AP*G)-3') | synthetic construct | Structure of pre-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the +2 position. | Electron microscopy | 2.61 | 33 | 2026-06-24 | |||
| 3 | 9W8W|1|P+ 9W8W|1|T+ 9W8W|1|N | DNA (NTS, non-template strand), DNA (TS, template strand), RNA (5'-R(*UP*AP*CP*AP*AP*UP*GP*UP*UP*GP*GP*AP*AP*AP*GP*GP*AP*GP*AP*GP*A)-3') | synthetic construct | Structure of backtracked yeast Pol II in complex with a cisplatin-induced inter-strand crosslink lesion at the +2 position. | Electron microscopy | 2.91 | 34 | 2026-06-24 |
Release history
| Release | 4.45 |
|---|---|
| Date | 2026-06-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9W8W|1|P+ 9W8W|1|T+ 9W8W|1|N | Structure of backtracked yeast Pol II in complex with a cisplatin-induced inter-strand crosslink lesion at the +2 position. | ELECTRON MICROSCOPY | 2.91 | 34 | |
| 2 | 9W8U|1|P+ 9W8U|1|T+ 9W8U|1|N | Structure of pre-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the +2 position. | ELECTRON MICROSCOPY | 2.61 | 33 | |
| 3 | 9W8V|1|P+ 9W8V|1|T+ 9W8V|1|N | Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the +2 position. | ELECTRON MICROSCOPY | 2.23 | 36 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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