Equivalence class NR_4.0_24191.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1VY6|1|AW (rep) | Cytidine-Puromycin | synthetic construct | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2 | 2014-08-20 | |||
| 2 | 1VY6|1|CW | Cytidine-Puromycin | synthetic construct | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2 | 2014-08-20 | |||
| 3 | 4A3G|1|P | TRANSCRIPT RNA 5'-R(*CP*AP)-3' | Saccharomyces cerevisiae | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-ray diffraction | 3.5 | 2 | 2012-02-08 | |||
| 4 | 4A3J|1|P | 5'-R(*CP*AP)-3' | synthetic construct | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-ray diffraction | 3.7 | 2 | 2011-12-07 | |||
| 5 | 9Q87|1|6 | A-site tRNA | Escherichia coli B | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | Electron microscopy | 1.55 | 2 | 2025-05-14 | |||
| 6 | 8AYE|1|5 | E-site tRNA | Escherichia coli | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2 | 2023-03-01 | |||
| 7 | 7K00|1|5 | E-site tRNA | Escherichia coli | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2 | 2020-09-23 | |||
| 8 | 8QOA|1|5 | E-site tRNA | Escherichia coli BW25113 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 2 | 2024-03-20 | |||
| 9 | 7QIW|1|s | tRNA | Solanum lycopersicum | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | Electron microscopy | 2.35 | 2 | 2022-07-13 | |||
| 10 | 7QIZ|1|s | tRNA | Solanum lycopersicum | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 2 | 2022-08-03 | |||
| 11 | 7NBU|1|W | E-site tRNA | Escherichia coli K-12 | Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. | Electron microscopy | 3.11 | 2 | 2022-03-02 | |||
| 12 | 5MMI|1|z | E-site tRNA | Spinacia oleracea | Structure of the large subunit of the chloroplast ribosome | Electron microscopy | 3.2 | 2 | 2017-01-11 | |||
| 13 | 3J9M|1|u | E-site tRNA | Homo sapiens | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2 | 2015-04-15 | |||
| 14 | 7A5K|1|u3 | RNA | Homo sapiens | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 2 | 2020-12-23 | |||
| 15 | 6NU2|1|u | E-site tRNA | Homo sapiens | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 3.9 | 2 | 2019-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8AYE|1|5 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | ELECTRON MICROSCOPY | 1.96 | 2 | |
| 2 | 8QOA|1|5 | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 2 | |
| 3 | 3J9M|1|u | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 2 | |
| 4 | 4A3G|1|P | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-RAY DIFFRACTION | 3.5 | 2 | |
| 5 | 1VY6|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2 | |
| 6 | 4A3J|1|P | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-RAY DIFFRACTION | 3.7 | 2 | |
| 7 | 1VY6|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 2 | |
| 8 | 7QIZ|1|s | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 2 | |
| 9 | 7QIW|1|s | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | ELECTRON MICROSCOPY | 2.35 | 2 | |
| 10 | 7A5K|1|u3 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 2 | |
| 11 | 7NBU|1|W | Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. | ELECTRON MICROSCOPY | 3.11 | 2 | |
| 12 | 6NU2|1|u | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 2 | |
| 13 | 9Q87|1|6 | Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ | ELECTRON MICROSCOPY | 1.55 | 2 | |
| 14 | 5MMI|1|z | Structure of the large subunit of the chloroplast ribosome | ELECTRON MICROSCOPY | 3.2 | 2 | |
| 15 | 7K00|1|5 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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