Equivalence class NR_4.0_24890.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6GSL|1|1L (rep) | Transfer RNA | mRNA, tRNAArg | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-ray diffraction | 3.16 | 74 | 2018-07-04 |
| 2 | 6GSL|1|1K | Transfer RNA | mRNA, tRNAArg | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-ray diffraction | 3.16 | 72 | 2018-07-04 |
| 3 | 6TBV|1|PTR1 | Transfer RNA | mRNA, P-site Arg-tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) | Electron microscopy | 2.7 | 76 | 2020-01-01 |
| 4 | 6TC3|1|PTR1 | Transfer RNA | mRNA, P-site Arg-tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) | Electron microscopy | 2.7 | 76 | 2020-01-01 |
| 5 | 7NSQ|1|v | Transfer RNA | AtRNA (Arg), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | Electron microscopy | 3.1 | 77 | 2021-07-14 |
| 6 | 8PKL|1|X | Transfer RNA | mRNA, tRNA-Arg (E-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state) | Electron microscopy | 3.09 | 77 | 2024-03-06 |
| 7 | 7NSP|1|v | Transfer RNA | A-tRNA (Arg), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | Electron microscopy | 3.5 | 77 | 2021-08-11 |
| 8 | 8R3V|1|X2 | Transfer RNA | messenger RNA, tRNA-Arg (E-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (non-rotated disome interface) | Electron microscopy | 3.28 | 77 | 2024-03-06 |
| 9 | 8RCL|1|X2 | Transfer RNA | messenger RNA, tRNA-Arg (E-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (Non-rotated disome interface class 1) | Electron microscopy | 3.49 | 77 | 2024-03-13 |
| 10 | 8RCM|1|X2 | Transfer RNA | tRNA-Arg (E-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | Electron microscopy | 3.59 | 77 | 2024-03-06 |
Release history
| Release | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 | 3.365 | 3.366 | 3.367 | 3.368 | 3.369 | 3.370 | 3.371 | 3.372 | 3.373 | 3.374 | 3.375 | 3.376 | 3.377 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 | 2024-12-11 | 2024-12-18 | 2024-12-25 | 2025-01-01 | 2025-01-08 | 2025-01-15 | 2025-01-22 | 2025-01-29 | 2025-02-05 | 2025-02-12 | 2025-02-19 | 2025-02-26 | 2025-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8PKL|1|X | Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state) | ELECTRON MICROSCOPY | 3.09 | 77 | |
| 2 | 8R3V|1|X2 | Escherichia coli paused disome complex (non-rotated disome interface) | ELECTRON MICROSCOPY | 3.28 | 77 | |
| 3 | 8RCL|1|X2 | Escherichia coli paused disome complex (Non-rotated disome interface class 1) | ELECTRON MICROSCOPY | 3.49 | 77 | |
| 4 | 8RCM|1|X2 | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | ELECTRON MICROSCOPY | 3.59 | 77 | |
| 5 | 6GSL|1|1L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 74 | |
| 6 | 6GSL|1|1K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site | X-RAY DIFFRACTION | 3.16 | 72 | |
| 7 | 7NSP|1|v | Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | ELECTRON MICROSCOPY | 3.5 | 77 | |
| 8 | 7NSQ|1|v | Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA | ELECTRON MICROSCOPY | 3.1 | 77 | |
| 9 | 6TBV|1|PTR1 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) | ELECTRON MICROSCOPY | 2.7 | 76 | |
| 10 | 6TC3|1|PTR1 | Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) | ELECTRON MICROSCOPY | 2.7 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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