Equivalence class NR_4.0_28277.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8ZTV|1|Y (rep) | Transfer RNA | mRNA, RNA (73-MER) | Escherichia coli | Bacteria | RF00005 | 70S ribosome arrested by PepNL with RF2 | Electron microscopy | 2.9 | 71 | 2025-03-19 |
| 2 | 8ZTU|1|Y | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome arrested by PepNL | Electron microscopy | 2.9 | 73 | 2025-03-19 |
| 3 | 30RA|1|Z | Transfer RNA | mRNA, tRNA Asp | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15 | Electron microscopy | 2.78 | 73 | 2026-05-27 |
| 4 | 7D6Z|1|3 | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor | Electron microscopy | 3.4 | 70 | 2021-04-07 |
| 5 | 30QZ|1|Z | Transfer RNA | tRNA Asp | Escherichia coli | Bacteria | RF00005 | E. coli 50S ribosome with peptidyl-tRNA and Hsp15 | Electron microscopy | 2.23 | 76 | 2026-05-27 |
| 6 | 5JU8|1|AX | Transfer RNA | mRNA, P-site tRNA Aspartate | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA | Electron microscopy | 3.6 | 77 | 2016-07-20 |
| 7 | 5JTE|1|AX | Transfer RNA | mRNA, P-site tRNA Aspartate | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | Electron microscopy | 3.6 | 77 | 2016-07-20 |
| 8 | 30RB|1|Z | Transfer RNA | tRNA Asp | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with peptidyl-tRNA and Hsp15 | Electron microscopy | 2.92 | 73 | 2026-05-27 |
Release history
| Release | 4.41 |
|---|---|
| Date | 2026-05-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8ZTU|1|Y | 70S ribosome arrested by PepNL | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 2 | 8ZTV|1|Y | 70S ribosome arrested by PepNL with RF2 | ELECTRON MICROSCOPY | 2.9 | 71 | |
| 3 | 30RA|1|Z | E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15 | ELECTRON MICROSCOPY | 2.78 | 73 | |
| 4 | 7D6Z|1|3 | Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor | ELECTRON MICROSCOPY | 3.4 | 70 | |
| 5 | 5JU8|1|AX | Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA | ELECTRON MICROSCOPY | 3.6 | 77 | |
| 6 | 5JTE|1|AX | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | ELECTRON MICROSCOPY | 3.6 | 77 | |
| 7 | 30QZ|1|Z | E. coli 50S ribosome with peptidyl-tRNA and Hsp15 | ELECTRON MICROSCOPY | 2.23 | 76 | |
| 8 | 30RB|1|Z | E. coli 70S ribosome with peptidyl-tRNA and Hsp15 | ELECTRON MICROSCOPY | 2.92 | 73 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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