Equivalence class NR_4.0_30505.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7UTN|1|C+ 7UTN|1|A+ 7UTN|1|B (rep) | DNA non-target strand, DNA target strand, RNA (222-MER) | synthetic construct | IscB and wRNA bound to Target DNA | Electron microscopy | 2.74 | 228 | 2022-06-15 | |||
| 2 | 9LIR|1|A+ 9LIR|1|B | DNA (26-MER), DNA (27-MER), RNA (194-MER) | synthetic construct | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | Electron microscopy | 3.1 | 221 | 2026-01-21 | |||
| 3 | 7XHT|1|B+ 7XHT|1|C+ 7XHT|1|D | DNA (49-MER), DNA (5'-D(P*GP*AP*AP*GP*AP*AP*AP*AP*CP*CP*AP*T)-3'), RNA (228-MER) | metagenome | Structure of the OgeuIscB-omega RNA-target DNA complex | Electron microscopy | 2.55 | 220 | 2022-12-14 | |||
| 4 | 8CSZ|1|C+ 8CSZ|1|B+ 8CSZ|1|E | DNA non-target strand, DNA target strand, RNA (222-MER) | synthetic construct | IscB and wRNA bound to Target DNA | Electron microscopy | 3.2 | 236 | 2022-06-15 | |||
| 5 | 9LJ4|1|B+ 9LJ4|1|D+ 9LJ4|1|C | DNA (5'-D(P*TP*AP*GP*GP*TP*GP*GP*TP*TP*GP*TP*CP*GP*GP*CP*CP*A)-3'), DNA (5'-D(P*TP*CP*AP*AP*CP*CP*AP*CP*CP*TP*AP*C)-3'), RNA (190-MER) | synthetic construct | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | Electron microscopy | 3.09 | 219 | 2026-01-21 | |||
| 6 | 9LIQ|1|B | DNA (5'-D(P*GP*GP*CP*C)-3'), RNA (190-MER) | synthetic construct | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | Electron microscopy | 3.04 | 190 | 2026-01-21 | |||
| 7 | 9LIS|1|B+ 9LIS|1|D+ 9LIS|1|C | DNA (5'-D(P*CP*TP*AP*GP*GP*TP*GP*GP*TP*TP*GP*TP*CP*GP*GP*CP*C)-3'), DNA (5'-D(P*CP*TP*CP*AP*AP*CP*CP*AP*CP*CP*TP*AP*C)-3'), RNA (190-MER) | synthetic construct | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | Electron microscopy | 3.39 | 220 | 2026-01-21 | |||
| 8 | 8CTL|1|C+ 8CTL|1|A+ 8CTL|1|B | DNA non-target strand, DNA target strand, RNA (222-MER) | synthetic construct | IscB and wRNA bound to Target DNA (locked state) | Electron microscopy | 3.1 | 233 | 2022-06-15 |
Release history
| Release | 4.23 |
|---|---|
| Date | 2026-01-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8CSZ|1|C+ 8CSZ|1|B+ 8CSZ|1|E | IscB and wRNA bound to Target DNA | ELECTRON MICROSCOPY | 3.2 | 236 | |
| 2 | 7UTN|1|C+ 7UTN|1|A+ 7UTN|1|B | IscB and wRNA bound to Target DNA | ELECTRON MICROSCOPY | 2.74 | 228 | |
| 3 | 8CTL|1|C+ 8CTL|1|A+ 8CTL|1|B | IscB and wRNA bound to Target DNA (locked state) | ELECTRON MICROSCOPY | 3.1 | 233 | |
| 4 | 7XHT|1|B+ 7XHT|1|C+ 7XHT|1|D | Structure of the OgeuIscB-omega RNA-target DNA complex | ELECTRON MICROSCOPY | 2.55 | 220 | |
| 5 | 9LJ4|1|B+ 9LJ4|1|D+ 9LJ4|1|C | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | ELECTRON MICROSCOPY | 3.09 | 219 | |
| 6 | 9LIQ|1|B | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | ELECTRON MICROSCOPY | 3.04 | 190 | |
| 7 | 9LIS|1|B+ 9LIS|1|D+ 9LIS|1|C | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | ELECTRON MICROSCOPY | 3.39 | 220 | |
| 8 | 9LIR|1|A+ 9LIR|1|B | CryoEM Structures Uncover the Unexpected Hinges of IscB for Enhanced Gene Editing | ELECTRON MICROSCOPY | 3.1 | 221 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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