Equivalence class NR_4.0_31699.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9OWM|1|C (rep) | Transfer RNA | mature tRNA (75-MER) | Geobacillus stearothermophilus | Bacteria | RF00005 | Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+ | Electron microscopy | 2.95 | 75 | 2026-05-20 |
| 2 | 9OWL|1|C | Transfer RNA | mature tRNA (75-MER) | Geobacillus stearothermophilus | Bacteria | RF00005 | Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+ | Electron microscopy | 2.99 | 75 | 2026-05-20 |
| 3 | 4MGN|1|B | Transfer RNA | tRNA-glycine | RF00005 | Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA | X-ray diffraction | 3.2 | 72 | 2013-10-23 | ||
| 4 | 4MGN|1|D | Transfer RNA | tRNA-glycine | RF00005 | Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA | X-ray diffraction | 3.2 | 73 | 2013-10-23 | ||
| 5 | 4MGM|1|B | Transfer RNA | tRNA glycine | RF00005 | Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly | X-ray diffraction | 3.2 | 63 | 2013-10-23 | ||
| 6 | 4MGM|1|A | Transfer RNA | tRNA glycine | RF00005 | Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly | X-ray diffraction | 3.2 | 63 | 2013-10-23 |
Release history
| Release | 4.40 |
|---|---|
| Date | 2026-05-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9OWM|1|C | Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+ | ELECTRON MICROSCOPY | 2.95 | 75 | |
| 2 | 9OWL|1|C | Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+ | ELECTRON MICROSCOPY | 2.99 | 75 | |
| 3 | 4MGM|1|A | Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly | X-RAY DIFFRACTION | 3.2 | 63 | |
| 4 | 4MGM|1|B | Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly | X-RAY DIFFRACTION | 3.2 | 63 | |
| 5 | 4MGN|1|B | Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA | X-RAY DIFFRACTION | 3.2 | 72 | |
| 6 | 4MGN|1|D | Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA | X-RAY DIFFRACTION | 3.2 | 73 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: