RNA 3D Hub //

Equivalence class NR_4.0_31819.6 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11QTQ|1|B (rep)Transfer RNARNA (TRNA GLN II )Escherichia coliBacteriaRF00005GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOGX-ray diffraction2.251998-05-27
24JXX|1|BRNA (71-MER)Crystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditionsX-ray diffraction2.32013-05-01
31ZJW|1|BGlutaminyl-tRNAGlutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNAX-ray diffraction2.52005-06-07
44V7M|1|AWTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-GlnEscherichia coliBacteriaRF00005The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
54V7M|1|CWTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-GlnEscherichia coliBacteriaRF00005The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
64V7L|1|AWTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-GlnEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
74V7L|1|CWTransfer RNARNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-GlnEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
81EUY|1|BGLUTAMINYL TRNAGLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITORX-ray diffraction2.62000-06-04
94V7L|1|AYTransfer RNAtRNA-GlnEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
104V7L|1|CYTransfer RNAtRNA-GlnEscherichia coliBacteriaRF00005The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
111EUQ|1|BGLUTAMINYL TRNACRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITORX-ray diffraction3.12000-06-04
121QRS|1|BTransfer RNATRNAGLN2Escherichia coliBacteriaRF00005GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNAX-ray diffraction2.61996-12-07
131QRT|1|BTransfer RNATRNAGLN2Escherichia coliBacteriaRF00005GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNAX-ray diffraction2.71996-12-07
141QRU|1|BTransfer RNATRNAGLN2Escherichia coliBacteriaRF00005GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNAX-ray diffraction31996-12-07
151GTR|1|BRNA (74-MER)STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASEX-ray diffraction2.51995-02-07
162RD2|1|BGlutamine tRNAGlutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINEX-ray diffraction2.62008-01-15
171GTS|1|BTransfer RNATRNAGLNEscherichia coliBacteriaRF00005STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASEX-ray diffraction2.81995-02-07
185NWY|1|MTransfer RNAGln-tRNA, mRNAEscherichia coliBacteriaRF000052.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.92017-07-19
192RE8|1|BGlutamine tRNAGlutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINEX-ray diffraction2.62008-01-15
209GFT|1|MTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Structure of the HrpA-bound E. coli disome, Class IElectron microscopy3.12025-02-12
211GSG|1|TTRNAGLNStructure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolutionX-ray diffraction2.81992-02-24
229GGR|1|MTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Structure of the HrpA-bound E. coli disome, Class IIElectron microscopy3.22025-02-12
231O0C|1|BGlutaminyl tRNACRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-ray diffraction2.72003-04-15
247QGN|1|MTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Structure of the SmrB-bound E. coli disome - stalled 70S ribosomeElectron microscopy3.372022-04-27
251O0B|1|BGlutaminyl tRNACRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-ray diffraction2.72003-04-15
267QG8|1|MTransfer RNAP-site tRNAEscherichia coli K-12BacteriaRF00005Structure of the collided E. coli disome - VemP-stalled 70S ribosomeElectron microscopy3.972022-03-16
271EXD|1|BGLUTAMINE TRNA APTAMERCRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-ray diffraction2.72000-05-15

Release history

Release3.374
Date2025-02-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11EXD|1|BCRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-RAY DIFFRACTION2.773
21EUQ|1|BCRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITORX-RAY DIFFRACTION3.172
31EUY|1|BGLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITORX-RAY DIFFRACTION2.673
44JXX|1|BCrystal structure of E coli E. coli glutaminyl-tRNA synthetase bound to tRNA(Gln)(CUG) and ATP from novel cryostabilization conditionsX-RAY DIFFRACTION2.371
51GTR|1|BSTRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASEX-RAY DIFFRACTION2.574
61GTS|1|BSTRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASEX-RAY DIFFRACTION2.874
71QRU|1|BGLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNAX-RAY DIFFRACTION374
81QRT|1|BGLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNAX-RAY DIFFRACTION2.774
91QRS|1|BGLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNAX-RAY DIFFRACTION2.674
101QTQ|1|BGLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOGX-RAY DIFFRACTION2.2574
111O0C|1|BCRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-RAY DIFFRACTION2.774
121O0B|1|BCRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASEX-RAY DIFFRACTION2.774
131ZJW|1|BGlutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNAX-RAY DIFFRACTION2.574
142RE8|1|BGlutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINEX-RAY DIFFRACTION2.674
152RD2|1|BGlutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINEX-RAY DIFFRACTION2.674
164V7M|1|CWThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4574
174V7L|1|AWThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION375
184V7M|1|AWThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4574
194V7L|1|CWThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION375
209GGR|1|MStructure of the HrpA-bound E. coli disome, Class IIELECTRON MICROSCOPY3.275
219GFT|1|MStructure of the HrpA-bound E. coli disome, Class IELECTRON MICROSCOPY3.175
225NWY|1|M2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.975
237QGN|1|MStructure of the SmrB-bound E. coli disome - stalled 70S ribosomeELECTRON MICROSCOPY3.3775
247QG8|1|MStructure of the collided E. coli disome - VemP-stalled 70S ribosomeELECTRON MICROSCOPY3.9775
254V7L|1|CYThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION375
264V7L|1|AYThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION375
271GSG|1|TStructure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolutionX-RAY DIFFRACTION2.866

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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