Equivalence class NR_4.0_32338.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5XUZ|1|B+ 5XUZ|1|C+ 5XUZ|1|D (rep) | crRNA, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*CP*CP*CP*A)-3') | synthetic construct | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) | X-ray diffraction | 2.4 | 78 | 2017-08-09 | |||
| 2 | 5XUZ|1|F+ 5XUZ|1|G+ 5XUZ|1|H | crRNA, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*CP*CP*CP*A)-3') | synthetic construct | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) | X-ray diffraction | 2.4 | 78 | 2017-08-09 | |||
| 3 | 5XUT|1|B+ 5XUT|1|C+ 5XUT|1|D | crRNA, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*CP*TP*A)-3') | synthetic construct | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCTA PAM) | X-ray diffraction | 2.4 | 78 | 2017-08-09 | |||
| 4 | 5XUS|1|B+ 5XUS|1|C+ 5XUS|1|D | crRNA, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*A)-3') | synthetic construct | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TTTA PAM) | X-ray diffraction | 2.5 | 78 | 2017-08-09 | |||
| 5 | 5XUU|1|B+ 5XUU|1|C+ 5XUU|1|D | crRNA, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*CP*CP*A)-3') | synthetic construct | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCCA PAM) | X-ray diffraction | 2.5 | 78 | 2017-08-09 | |||
| 6 | 6NMA|1|G | RNA | Lachnospiraceae bacterium ND2006 | CryoEM structure of the LbCas12a-crRNA-AcrVA4 complex | Electron microscopy | 3.38 | 25 | 2019-06-12 | |||
| 7 | 6OMV|1|G+ 6OMV|1|E+ 6OMV|1|F | DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*AP*GP*GP*A)-3'), DNA (5'-D(P*TP*AP*AP*TP*TP*TP*CP*CP*TP*AP*AP*AP*GP*GP*AP*CP*G)-3'), RNA | Lachnospiraceae bacterium ND2006 | CryoEM structure of the LbCas12a-crRNA-AcrVA4-DNA complex | Electron microscopy | 3.9 | 58 | 2019-06-12 | |||
| 8 | 6NM9|1|E | RNA (25-MER) | Lachnospiraceae bacterium ND2006 | CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer | Electron microscopy | 3.38 | 25 | 2019-06-12 | |||
| 9 | 6NM9|1|G | RNA (25-MER) | Lachnospiraceae bacterium ND2006 | CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer | Electron microscopy | 3.38 | 25 | 2019-06-12 | |||
| 10 | 6NMD|1|G | crRNA | Lachnospiraceae bacterium ND2006 | cryo-EM Structure of the LbCas12a-crRNA-AcrVA1 complex | Electron microscopy | 3.49 | 25 | 2019-06-12 |
Release history
| Release | 3.382 |
|---|---|
| Date | 2025-04-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5XUZ|1|F+ 5XUZ|1|G+ 5XUZ|1|H | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) | X-RAY DIFFRACTION | 2.4 | 78 | |
| 2 | 5XUT|1|B+ 5XUT|1|C+ 5XUT|1|D | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCTA PAM) | X-RAY DIFFRACTION | 2.4 | 78 | |
| 3 | 5XUU|1|B+ 5XUU|1|C+ 5XUU|1|D | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCCA PAM) | X-RAY DIFFRACTION | 2.5 | 78 | |
| 4 | 5XUS|1|B+ 5XUS|1|C+ 5XUS|1|D | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TTTA PAM) | X-RAY DIFFRACTION | 2.5 | 78 | |
| 5 | 5XUZ|1|B+ 5XUZ|1|C+ 5XUZ|1|D | Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) | X-RAY DIFFRACTION | 2.4 | 78 | |
| 6 | 6NM9|1|E | CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer | ELECTRON MICROSCOPY | 3.38 | 25 | |
| 7 | 6NM9|1|G | CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer | ELECTRON MICROSCOPY | 3.38 | 25 | |
| 8 | 6NMA|1|G | CryoEM structure of the LbCas12a-crRNA-AcrVA4 complex | ELECTRON MICROSCOPY | 3.38 | 25 | |
| 9 | 6NMD|1|G | cryo-EM Structure of the LbCas12a-crRNA-AcrVA1 complex | ELECTRON MICROSCOPY | 3.49 | 25 | |
| 10 | 6OMV|1|G+ 6OMV|1|E+ 6OMV|1|F | CryoEM structure of the LbCas12a-crRNA-AcrVA4-DNA complex | ELECTRON MICROSCOPY | 3.9 | 58 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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