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Equivalence class NR_4.0_33135.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16QCW|1|V+ 6QCW|1|R+ 6QCW|1|M (rep)RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-ray diffraction2.88492019-06-05
26QCX|1|V+ 6QCX|1|R+ 6QCX|1|MRNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-ray diffraction3.08502019-06-05
34WRT|1|V+ 4WRT|1|RInfluenza virus polymerase vRNA promoter 3' end, Influenza virus polymerase vRNA promoter 5' endInfluenza B virusCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-ray diffraction2.7292014-11-19
46QCV|1|V+ 6QCV|1|R+ 6QCV|1|MRNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-ray diffraction3.24492019-06-05
57Z43|1|VVV+ 7Z43|1|RRRRNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')Influenza B virusInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-ray diffraction3.123322022-05-11
64WSA|1|V+ 4WSA|1|RInfluenza B vRNA promoter 3' end, Influenza B vRNA promoter 5' endInfluenza B virusCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-ray diffraction3.4282014-11-19
75M3J|1|V+ 5M3J|1|RRNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')Influenza B virusInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-ray diffraction3.5282016-12-21
85MSG|1|V+ 5MSG|1|RRNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')Influenza B virusInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-ray diffraction3.8322017-02-08
97R0E|1|V+ 7R0E|1|M+ 7R0E|1|R3' vRNA, 5' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionElectron microscopy2.51512022-12-28
108BEK|1|V+ 8BEK|1|R+ 8BEK|1|M3' vRNA, 5' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionElectron microscopy2.86492022-12-28
116T0N|1|V+ 6T0N|1|R3' vRNA, 5' vRNAInfluenza B virusBat Influenza A polymerase pre-initiation complexElectron microscopy2.54292020-04-15
126QCS|1|V+ 6QCS|1|R3 end, 5 endInfluenza B virusInfluenza B polymerase pre-initiation complexElectron microscopy3.1292019-06-05
136SZV|1|V5' vRNAInfluenza B virusBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)Electron microscopy2.5142020-04-15
147QTL|1|V5' vRNAInfluenza A virusInfluenza A/H7N9 polymerase elongation complexElectron microscopy2.48132022-12-28
157R1F|1|V5' vRNAInfluenza B virusEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106Electron microscopy2.58122022-12-28
166T0V|1|V5' vRNAInfluenza A virusBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)Electron microscopy3.02142020-04-15
176QCT|1|V5 endInfluenza B virusInfluenza B polymerase elongation complexElectron microscopy3.2132019-06-05
187ZPL|1|U5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.12122022-12-28
197ZPL|1|V5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.12122022-12-28

Release history

Release3.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16T0N|1|V+ 6T0N|1|RBat Influenza A polymerase pre-initiation complexELECTRON MICROSCOPY2.5429
27R0E|1|V+ 7R0E|1|M+ 7R0E|1|REarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionELECTRON MICROSCOPY2.5151
38BEK|1|V+ 8BEK|1|R+ 8BEK|1|MEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionELECTRON MICROSCOPY2.8649
44WRT|1|V+ 4WRT|1|RCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-RAY DIFFRACTION2.729
56QCS|1|V+ 6QCS|1|RInfluenza B polymerase pre-initiation complexELECTRON MICROSCOPY3.129
64WSA|1|V+ 4WSA|1|RCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-RAY DIFFRACTION3.428
75M3J|1|V+ 5M3J|1|RInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-RAY DIFFRACTION3.528
85MSG|1|V+ 5MSG|1|RInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-RAY DIFFRACTION3.832
97Z43|1|VVV+ 7Z43|1|RRRInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-RAY DIFFRACTION3.12332
106QCW|1|V+ 6QCW|1|R+ 6QCW|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-RAY DIFFRACTION2.8849
116QCX|1|V+ 6QCX|1|R+ 6QCX|1|MCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-RAY DIFFRACTION3.0850
126QCV|1|V+ 6QCV|1|R+ 6QCV|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-RAY DIFFRACTION3.2449
137QTL|1|VInfluenza A/H7N9 polymerase elongation complexELECTRON MICROSCOPY2.4813
147ZPL|1|VSymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
157ZPL|1|USymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
166SZV|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)ELECTRON MICROSCOPY2.514
176T0V|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)ELECTRON MICROSCOPY3.0214
187R1F|1|VEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106ELECTRON MICROSCOPY2.5812
196QCT|1|VInfluenza B polymerase elongation complexELECTRON MICROSCOPY3.213

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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