RNA 3D Hub //

Equivalence class NR_4.0_38474.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14NIA|1|c+ 4NIA|1|r (rep)RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
24NIA|1|a+ 4NIA|1|pRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
34NIA|1|S+ 4NIA|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
44NIA|1|W+ 4NIA|1|lRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
54NIA|1|d+ 4NIA|1|sRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
64NIA|1|Y+ 4NIA|1|nRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
74NIA|1|R+ 4NIA|1|gRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
84NIA|1|U+ 4NIA|1|jRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
94NIA|1|V+ 4NIA|1|kRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
104NIA|1|b+ 4NIA|1|qRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
114NIA|1|T+ 4NIA|1|iRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
124NIA|1|Z+ 4NIA|1|oRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
134NIA|1|P+ 4NIA|1|eRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
144NIA|1|Q+ 4NIA|1|fRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
154NIA|1|X+ 4NIA|1|mRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.82202014-09-10
161A34|1|B+ 1A34|1|CRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-ray diffraction1.81201998-04-29
174OQ9|1|T+ 4OQ9|1|iRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
184OQ9|1|R+ 4OQ9|1|gRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
194OQ9|1|U+ 4OQ9|1|jRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
204OQ9|1|a+ 4OQ9|1|pRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
214OQ9|1|c+ 4OQ9|1|rRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
224OQ9|1|S+ 4OQ9|1|hRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
234OQ9|1|Q+ 4OQ9|1|fRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
244OQ9|1|V+ 4OQ9|1|kRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
254OQ9|1|Y+ 4OQ9|1|nRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
264OQ9|1|W+ 4OQ9|1|lRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
274OQ9|1|Z+ 4OQ9|1|oRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
284OQ9|1|d+ 4OQ9|1|sRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
297M50|1|X+ 7M50|1|mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Satellite tobacco mosaic virusCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-ray diffraction2.31152021-12-15
304OQ9|1|P+ 4OQ9|1|eRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
314OQ9|1|X+ 4OQ9|1|mRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
324OQ9|1|b+ 4OQ9|1|qRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.45202014-09-10
334OQ8|1|B+ 4OQ8|1|CRNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Tobacco virtovirus 1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-ray diffraction1.45202014-09-10

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
11A34|1|B+ 1A34|1|CSATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-RAY DIFFRACTION1.8120
24NIA|1|P+ 4NIA|1|eSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
34NIA|1|T+ 4NIA|1|iSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
44NIA|1|W+ 4NIA|1|lSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
54NIA|1|a+ 4NIA|1|pSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
64NIA|1|S+ 4NIA|1|hSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
74NIA|1|Y+ 4NIA|1|nSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
84NIA|1|V+ 4NIA|1|kSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
94NIA|1|U+ 4NIA|1|jSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
104NIA|1|Q+ 4NIA|1|fSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
114NIA|1|c+ 4NIA|1|rSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
124NIA|1|Z+ 4NIA|1|oSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
134NIA|1|R+ 4NIA|1|gSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
144NIA|1|X+ 4NIA|1|mSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
154NIA|1|d+ 4NIA|1|sSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
164NIA|1|b+ 4NIA|1|qSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.8220
174OQ9|1|P+ 4OQ9|1|eSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
184OQ9|1|Q+ 4OQ9|1|fSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
194OQ9|1|T+ 4OQ9|1|iSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
204OQ9|1|V+ 4OQ9|1|kSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
214OQ9|1|R+ 4OQ9|1|gSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
224OQ9|1|Y+ 4OQ9|1|nSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
234OQ9|1|X+ 4OQ9|1|mSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
244OQ9|1|a+ 4OQ9|1|pSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
254OQ9|1|b+ 4OQ9|1|qSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
264OQ9|1|d+ 4OQ9|1|sSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
274OQ9|1|U+ 4OQ9|1|jSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
284OQ9|1|W+ 4OQ9|1|lSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
294OQ9|1|Z+ 4OQ9|1|oSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
304OQ9|1|c+ 4OQ9|1|rSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
314OQ9|1|S+ 4OQ9|1|hSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.4520
324OQ8|1|B+ 4OQ8|1|CSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-RAY DIFFRACTION1.4520
337M50|1|X+ 7M50|1|mCrystallographic structure of a cubic crystal form of STMV grown from ammonium sulfateX-RAY DIFFRACTION2.3115

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0156 s