Equivalence class NR_4.0_39397.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9SHX|1|J+ 9SHX|1|K+ 9SHX|1|L (rep) | crRNA, Non-target strand, Target strand | Selenomonas sp. | Type I-F_HNH variant Cascade bound to dsDNA, HNH domain in middle position | Electron microscopy | 2.4 | 115 | 2026-02-04 | |||
| 2 | 8W1P|1|R+ 8W1P|1|N+ 8W1P|1|T | crRNA, Non-target strand DNA, Target strand DNA | synthetic construct | Structure of Selenomonas sp. Cascade (SsCascade) | Electron microscopy | 3.5 | 106 | 2024-08-07 | |||
| 3 | 9SJM|1|J | crRNA | Selenomonas sp. | Type I-F_HNH variant Cascade target-free RNP, HNH domain in inwards position | Electron microscopy | 3.13 | 60 | 2026-02-04 | |||
| 4 | 8YEO|1|C+ 8YEO|1|T+ 8YEO|1|N | 60-nt crRNA, NTS, TS | Selenomonas sp. | Type I-FHNH Cascade-dsDNA R-loop complex | Electron microscopy | 3.44 | 119 | 2024-07-31 | |||
| 5 | 8YDB|1|C+ 8YDB|1|T+ 8YDB|1|N | 60-nt crRNA, NTS, TS | Selenomonas sp. | Type I-FHNH Cascade-dsDNA intermediate complex | Electron microscopy | 3.4 | 103 | 2024-07-31 | |||
| 6 | 8YH9|1|C | 60-nt crRNA | Selenomonas sp. | Type I-FHNH Cascade complex | Electron microscopy | 3.35 | 60 | 2024-07-31 |
Release history
| Release | 4.25 |
|---|---|
| Date | 2026-02-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8YH9|1|C | Type I-FHNH Cascade complex | ELECTRON MICROSCOPY | 3.35 | 60 | |
| 2 | 9SJM|1|J | Type I-F_HNH variant Cascade target-free RNP, HNH domain in inwards position | ELECTRON MICROSCOPY | 3.13 | 60 | |
| 3 | 8W1P|1|R+ 8W1P|1|N+ 8W1P|1|T | Structure of Selenomonas sp. Cascade (SsCascade) | ELECTRON MICROSCOPY | 3.5 | 106 | |
| 4 | 8YDB|1|C+ 8YDB|1|T+ 8YDB|1|N | Type I-FHNH Cascade-dsDNA intermediate complex | ELECTRON MICROSCOPY | 3.4 | 103 | |
| 5 | 8YEO|1|C+ 8YEO|1|T+ 8YEO|1|N | Type I-FHNH Cascade-dsDNA R-loop complex | ELECTRON MICROSCOPY | 3.44 | 119 | |
| 6 | 9SHX|1|J+ 9SHX|1|K+ 9SHX|1|L | Type I-F_HNH variant Cascade bound to dsDNA, HNH domain in middle position | ELECTRON MICROSCOPY | 2.4 | 115 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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