Equivalence class NR_4.0_46963.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1PJG|1|A+ 1PJG|1|B (rep) | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 20 | 2003-12-09 | ||||
| 2 | 1PJO|1|A+ 1PJO|1|B | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-ray diffraction | 1.1 | 20 | 2003-12-09 | ||||
| 3 | 1G4Q|1|A+ 1G4Q|1|B | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-ray diffraction | 1.15 | 20 | 2003-07-08 | ||||
| 4 | 7OOO|1|A+ 7OOO|1|B | DNA (5'-D(*CP*TP*(RWQ)P*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-ray diffraction | 2.57 | 19 | 2022-08-03 | |||
| 5 | 7OOO|1|D+ 7OOO|1|E | DNA (5'-D(*CP*TP*(RWQ)P*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-ray diffraction | 2.57 | 19 | 2022-08-03 | |||
| 6 | 1JB8|1|A+ 1JB8|1|B | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-ray diffraction | 2.38 | 20 | 2003-07-01 | ||||
| 7 | 7NRP|1|A+ 7NRP|1|B | DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-ray diffraction | 2.67 | 20 | 2022-06-22 | |||
| 8 | 7OOS|1|A+ 7OOS|1|B | DNA (5'-D(*CP*TP*(RWT)P*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-ray diffraction | 2.6 | 19 | 2022-08-03 | |||
| 9 | 7OZZ|1|A+ 7OZZ|1|B | DNA (5'-D(*CP*TP*(RWR)P*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') | synthetic construct | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG with LNA-amide modification | X-ray diffraction | 2.7 | 19 | 2022-08-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7OOS|1|A+ 7OOS|1|B | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-RAY DIFFRACTION | 2.6 | 19 | |
| 2 | 7NRP|1|A+ 7NRP|1|B | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG | X-RAY DIFFRACTION | 2.67 | 20 | |
| 3 | 7OZZ|1|A+ 7OZZ|1|B | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG with LNA-amide modification | X-RAY DIFFRACTION | 2.7 | 19 | |
| 4 | 7OOO|1|A+ 7OOO|1|B | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-RAY DIFFRACTION | 2.57 | 19 | |
| 5 | 7OOO|1|D+ 7OOO|1|E | The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification | X-RAY DIFFRACTION | 2.57 | 19 | |
| 6 | 1PJO|1|A+ 1PJO|1|B | Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT | X-RAY DIFFRACTION | 1.1 | 20 | |
| 7 | 1PJG|1|A+ 1PJG|1|B | RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 20 | |
| 8 | 1G4Q|1|A+ 1G4Q|1|B | RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG | X-RAY DIFFRACTION | 1.15 | 20 | |
| 9 | 1JB8|1|A+ 1JB8|1|B | The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation | X-RAY DIFFRACTION | 2.38 | 20 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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