Equivalence class NR_4.0_51962.4 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
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1 | 4YCP|1|B (rep) | Transfer RNA | tRNATrp | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp | X-ray diffraction | 2.55 | 2015-04-22 |
2 | 4V5S|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
3 | 4V5R|1|CY | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
4 | 4V5S|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
5 | 4V5R|1|AY | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
6 | 4V5L|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
7 | 4V5Q|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
8 | 4V5Q|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
9 | 4V5P|1|AY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
10 | 4V5P|1|CY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
11 | 8PKL|1|W | Transfer RNA | mRNA, tRNA-Trp (P-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state) | Electron microscopy | 3.09 | 2024-03-06 |
12 | 8R3V|1|W | Transfer RNA | messenger RNA, tRNA-Trp (P-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (non-rotated disome interface) | Electron microscopy | 3.28 | 2024-03-06 |
13 | 8RCM|1|W | Transfer RNA | messenger RNA, tRNA-Trp (P-site) | Escherichia coli | Bacteria | RF00005 | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | Electron microscopy | 3.59 | 2024-03-06 |
Release history
Release | 3.325 |
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Date | 2024-03-06 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 4V5L|1|AY | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 67 | |
2 | 4V5S|1|AY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | |
3 | 4V5S|1|CY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | |
4 | 4V5Q|1|CY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | |
5 | 4V5Q|1|AY | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | |
6 | 4V5P|1|CY | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | |
7 | 4V5P|1|AY | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | |
8 | 4V5R|1|AY | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | |
9 | 4V5R|1|CY | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | |
10 | 4YCP|1|B | E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp | X-RAY DIFFRACTION | 2.55 | 62 | |
11 | 8RCM|1|W | Escherichia coli paused disome complex (Non-rotated disome interface class 2) | ELECTRON MICROSCOPY | 3.59 | 67 | |
12 | 8PKL|1|W | Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state) | ELECTRON MICROSCOPY | 3.09 | 67 | |
13 | 8R3V|1|W | Escherichia coli paused disome complex (non-rotated disome interface) | ELECTRON MICROSCOPY | 3.28 | 67 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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