RNA 3D Hub //

Equivalence class NR_4.0_53010.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
111IQ|1|ES (rep)Large subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 80S with eEF2,eIF5A and SERBP1Electron microscopy2.4352026-09-02
211HV|1|ESLarge subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 60S ribosomal subunit with eEF2 domain IV openElectron microscopy2.9672026-09-02
311HE|1|ESLarge subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 60S ribosomal subunit with eEF2 domain IV closedElectron microscopy2.86672026-09-02
411HG|1|ESLarge subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveledElectron microscopy2.9352026-09-02
511JJ|1|ESLarge subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveledElectron microscopy2.9352026-09-02
611KH|1|ESLarge subunit ribosomal RNAES27LOryctolagus cuniculusEukaryaRF02543Rabbit 80S with IFRD2 and LARP1, 40S head-swiveledElectron microscopy3.1352026-09-02

Release history

Release4.55
Date2026-09-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
111JJ|1|ESRabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveledELECTRON MICROSCOPY2.935
211KH|1|ESRabbit 80S with IFRD2 and LARP1, 40S head-swiveledELECTRON MICROSCOPY3.135
311HG|1|ESRabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveledELECTRON MICROSCOPY2.935
411IQ|1|ESRabbit 80S with eEF2,eIF5A and SERBP1ELECTRON MICROSCOPY2.435
511HE|1|ESRabbit 60S ribosomal subunit with eEF2 domain IV closedELECTRON MICROSCOPY2.8667
611HV|1|ESRabbit 60S ribosomal subunit with eEF2 domain IV openELECTRON MICROSCOPY2.967

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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