RNA 3D Hub //

Equivalence class NR_4.0_57046.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16YML|1|A+ 6YML|1|B (rep)Chains: A,C, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-ray diffraction2.172020-07-22
26YMK|1|A+ 6YMK|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
36YMM|1|A+ 6YMM|1|BChains: A, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAM from space group P312X-ray diffraction2.22020-07-22
46YMJ|1|M+ 6YMJ|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22
56YMJ|1|F+ 6YMJ|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22
66YMK|1|M+ 6YMK|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
76YMJ|1|A+ 6YMJ|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22
86YMM|1|C+ 6YMM|1|DChains: A, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAM from space group P312X-ray diffraction2.22020-07-22
96YMK|1|O+ 6YMK|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
106YMK|1|C+ 6YMK|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
116YMI|1|M+ 6YMI|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
126YMI|1|F+ 6YMI|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
136YMI|1|A+ 6YMI|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
146YMK|1|F+ 6YMK|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
156YMK|1|I+ 6YMK|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.032020-07-22
166YLB|1|M+ 6YLB|1|NChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
176YLB|1|I+ 6YLB|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
186YML|1|C+ 6YML|1|DChains: A,C, Chains: B,DRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-ray diffraction2.172020-07-22
196YLB|1|F+ 6YLB|1|GChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
206YMI|1|C+ 6YMI|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
216YLB|1|O+ 6YLB|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
226YMI|1|O+ 6YMI|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
236YMJ|1|C+ 6YMJ|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22
246YLB|1|C+ 6YLB|1|DChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
256YLB|1|A+ 6YLB|1|BChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with SAMX-ray diffraction2.122020-07-22
266YMI|1|I+ 6YMI|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with AMPX-ray diffraction2.52020-07-22
276YMJ|1|I+ 6YMJ|1|JChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22
286YMJ|1|O+ 6YMJ|1|PChains: A,C,F,I,M,O, Chains: B,D,G,J,N,PRoseobacter sp.Crystal structure of the SAM-SAH riboswitch with adenosineX-ray diffraction2.042020-07-22

Release history

Release3.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.353
Date2024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16YMK|1|A+ 6YMK|1|BCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
26YLB|1|A+ 6YLB|1|BCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225
36YLB|1|F+ 6YLB|1|GCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225
46YMK|1|M+ 6YMK|1|NCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
56YLB|1|M+ 6YLB|1|NCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225
66YML|1|A+ 6YML|1|BCrystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-RAY DIFFRACTION2.1725
76YMM|1|A+ 6YMM|1|BCrystal structure of the SAM-SAH riboswitch with SAM from space group P312X-RAY DIFFRACTION2.225
86YMK|1|F+ 6YMK|1|GCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
96YMJ|1|F+ 6YMJ|1|GCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
106YMJ|1|M+ 6YMJ|1|NCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
116YMJ|1|A+ 6YMJ|1|BCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
126YMI|1|A+ 6YMI|1|BCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
136YMI|1|F+ 6YMI|1|GCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
146YMI|1|M+ 6YMI|1|NCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
156YMM|1|C+ 6YMM|1|DCrystal structure of the SAM-SAH riboswitch with SAM from space group P312X-RAY DIFFRACTION2.225
166YML|1|C+ 6YML|1|DCrystal structure of the SAM-SAH riboswitch with decarboxylated SAHX-RAY DIFFRACTION2.1725
176YLB|1|C+ 6YLB|1|DCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225
186YMK|1|C+ 6YMK|1|DCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
196YMJ|1|C+ 6YMJ|1|DCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
206YMI|1|C+ 6YMI|1|DCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
216YMI|1|I+ 6YMI|1|JCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
226YMI|1|O+ 6YMI|1|PCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.525
236YMJ|1|O+ 6YMJ|1|PCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
246YMJ|1|I+ 6YMJ|1|JCrystal structure of the SAM-SAH riboswitch with adenosineX-RAY DIFFRACTION2.0425
256YMK|1|I+ 6YMK|1|JCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
266YMK|1|O+ 6YMK|1|PCrystal structure of the SAM-SAH riboswitch with AMPX-RAY DIFFRACTION2.0325
276YLB|1|O+ 6YLB|1|PCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225
286YLB|1|I+ 6YLB|1|JCrystal structure of the SAM-SAH riboswitch with SAMX-RAY DIFFRACTION2.1225

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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