RNA 3D Hub //

Equivalence class NR_4.0_58042.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18UB7|1|I+ 8UB7|1|H+ 8UB7|1|G (rep)RT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)Electron microscopy3.21482024-10-23
28UBE|1|I+ 8UBE|1|HRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1aElectron microscopy3.051562024-10-23
38UB9|1|I+ 8UB9|1|H+ 8UB9|1|GRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1aElectron microscopy3.071482024-10-23
48UBB|1|I+ 8UBB|1|H+ 8UBB|1|GRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1bElectron microscopy3.231482024-10-23
58UB8|1|I+ 8UB8|1|H+ 8UB8|1|GRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1aElectron microscopy3.281432024-10-23
68UBD|1|I+ 8UBD|1|H+ 8UBD|1|GRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2Electron microscopy3.051492024-10-23
78UBA|1|I+ 8UBA|1|H+ 8UBA|1|GRT-10 RNADiversity-generating retroelement (DGR) RNA avd, Diversity-generating retroelement (DGR) RNA Sp, Diversity-generating retroelement (DGR) RNA TRBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1bElectron microscopy3.21432024-10-23
88UBC|1|IRT-10 RNADiversity-generating retroelement (DGR) RNA SpBordetella phage BPP-1VirusesRF03022Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1bElectron microscopy3.29862024-10-23

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18UBA|1|I+ 8UBA|1|H+ 8UBA|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1bELECTRON MICROSCOPY3.2143
28UB8|1|I+ 8UB8|1|H+ 8UB8|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1aELECTRON MICROSCOPY3.28143
38UB9|1|I+ 8UB9|1|H+ 8UB9|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1aELECTRON MICROSCOPY3.07148
48UBD|1|I+ 8UBD|1|H+ 8UBD|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2ELECTRON MICROSCOPY3.05149
58UB7|1|I+ 8UB7|1|H+ 8UB7|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)ELECTRON MICROSCOPY3.2148
68UBB|1|I+ 8UBB|1|H+ 8UBB|1|GDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1bELECTRON MICROSCOPY3.23148
78UBC|1|IDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1bELECTRON MICROSCOPY3.2986
88UBE|1|I+ 8UBE|1|HDiversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1aELECTRON MICROSCOPY3.05156

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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