RNA 3D Hub //

Equivalence class NR_4.0_58155.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18CRE|1|1+ 8CRE|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333732024-09-18
28OI5|1|1+ 8OI5|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.933272024-10-09
38CRE|1|AS+ 8CRE|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-ray diffraction333872024-09-18
48OEQ|1|1+ 8OEQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)X-ray diffraction3.333742024-09-25
58CQ7|1|1+ 8CQ7|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosomeX-ray diffraction3.233732024-09-11
68OI5|1|AS+ 8OI5|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-ray diffraction2.932212024-10-09
78OEQ|1|AS+ 8OEQ|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)X-ray diffraction3.333572024-09-25
88OJ3|1|1+ 8OJ3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)X-ray diffraction3.533742024-10-09
98CQW|1|1+ 8CQW|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Hygromycin BX-ray diffraction3.0533652024-09-18
108C3A|1|1+ 8C3A|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction333742024-01-10
118CQ7|1|AS+ 8CQ7|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosomeX-ray diffraction3.233802024-09-11
128CQW|1|AS+ 8CQW|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Hygromycin BX-ray diffraction3.0533842024-09-18
138C3A|1|AS+ 8C3A|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-ray diffraction333872024-01-10
148OJ3|1|AS+ 8OJ3|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)X-ray diffraction3.532592024-10-09
158OH6|1|1+ 8OH6|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S (gene name XR_002086444.1), 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)X-ray diffraction3.3533762024-10-02
168OH6|1|AS+ 8OH6|1|AULarge subunit ribosomal RNA + 5.8S ribosomal RNA25S (gene name XR_002086444.1), 5.8SCandida albicansEukaryaRF02543 + RF00002Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)X-ray diffraction3.3532172024-10-02
177PZY|1|1+ 7PZY|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the vacant Candida albicans 80S ribosomeElectron microscopy2.3233672022-05-18
189G6J|1|1+ 9G6J|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicans SC5314EukaryaRF02543 + RF00002The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNAElectron microscopy2.1532222025-04-23
199G30|1|1+ 9G30|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicansEukaryaRF02543 + RF00002The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNAElectron microscopy2.3532222025-04-23
207Q08|1|1+ 7Q08|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cycloheximideElectron microscopy2.5633672022-05-25
218Q5I|1|1+ 8Q5I|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicansEukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with cephaelineElectron microscopy2.4532312023-09-13
227Q0F|1|1+ 7Q0F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with phyllanthosideElectron microscopy2.6433672022-05-18
237Q0R|1|1+ 7Q0R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with blasticidin sElectron microscopy2.6733672022-05-25
247Q0P|1|1+ 7Q0P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of the Candida albicans 80S ribosome in complex with anisomycinElectron microscopy2.7733672022-05-18
259G1Z|1|1+ 9G1Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNACandida albicans SC5314EukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)Electron microscopy3.133032025-04-23
268OGJ|1|1+ 8OGJ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNACandida albicansEukaryaRF02543 + RF00002Structure of Candida albicans 80S ribosome in complex with mefloquineElectron microscopy3.132842024-10-02

Release history

Release3.3843.3853.3863.3873.3883.3893.390
Date2025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19G6J|1|1+ 9G6J|1|4The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNAELECTRON MICROSCOPY2.153222
29G30|1|1+ 9G30|1|4The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNAELECTRON MICROSCOPY2.353222
38OGJ|1|1+ 8OGJ|1|4Structure of Candida albicans 80S ribosome in complex with mefloquineELECTRON MICROSCOPY3.13284
49G1Z|1|1+ 9G1Z|1|4Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)ELECTRON MICROSCOPY3.13303
57Q0F|1|1+ 7Q0F|1|4Structure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.643367
67Q08|1|1+ 7Q08|1|4Structure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.563367
77Q0P|1|1+ 7Q0P|1|4Structure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.773367
87Q0R|1|1+ 7Q0R|1|4Structure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.673367
97PZY|1|1+ 7PZY|1|4Structure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.323367
108Q5I|1|1+ 8Q5I|1|4Structure of Candida albicans 80S ribosome in complex with cephaelineELECTRON MICROSCOPY2.453231
118OH6|1|AS+ 8OH6|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)X-RAY DIFFRACTION3.353217
128OEQ|1|AS+ 8OEQ|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)X-RAY DIFFRACTION3.33357
138OJ3|1|AS+ 8OJ3|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)X-RAY DIFFRACTION3.53259
148CRE|1|AS+ 8CRE|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33387
158CQ7|1|AS+ 8CQ7|1|AUCrystal structure of phyllanthoside bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION3.23380
168CQW|1|AS+ 8CQW|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with Hygromycin BX-RAY DIFFRACTION3.053384
178C3A|1|AS+ 8C3A|1|AUCrystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33387
188OI5|1|AS+ 8OI5|1|AUCrystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93221
198OI5|1|1+ 8OI5|1|4Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)X-RAY DIFFRACTION2.93327
208OH6|1|1+ 8OH6|1|4Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)X-RAY DIFFRACTION3.353376
218OEQ|1|1+ 8OEQ|1|4Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)X-RAY DIFFRACTION3.33374
228OJ3|1|1+ 8OJ3|1|4Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)X-RAY DIFFRACTION3.53374
238CQW|1|1+ 8CQW|1|4Crystal structure of the Candida albicans 80S ribosome in complex with Hygromycin BX-RAY DIFFRACTION3.053365
248CQ7|1|1+ 8CQ7|1|4Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION3.23373
258CRE|1|1+ 8CRE|1|4Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418X-RAY DIFFRACTION33373
268C3A|1|1+ 8C3A|1|4Crystal structure of ailanthone bound to the Candida albicans 80S ribosomeX-RAY DIFFRACTION33374

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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