RNA 3D Hub //

Equivalence class NR_4.0_59199.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18OPL|1|Aj (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
28OPL|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
38OPL|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
48OPL|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
58OPL|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
68OPL|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
78OPL|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
88OPL|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
98OPL|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
108OPL|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
118OPL|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
128OPL|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
138OPL|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
148OPL|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
158OPL|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
168OPL|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
178OPL|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
188OPL|1|BjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
198OPL|1|BtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
208OPL|1|BuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
218OPL|1|BvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
228OPL|1|BwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
238OPL|1|BxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
248OPL|1|ByRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
258OPL|1|BzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
268OPL|1|CaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
278OPL|1|CbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAElectron microscopy2.4152024-01-24
288OPE|1|AbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
298OPE|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
308OPE|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
318OPE|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
328OPE|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
338OPE|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
348OPE|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
358OPE|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
368OPE|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
378OPE|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
388OPE|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
398OPE|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
408OPE|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
418OPE|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
428OPE|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
438OPE|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
448OPE|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
458OPE|1|BjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
468OPE|1|BlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
478OPE|1|BnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24
488OPE|1|BpRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus Y strain NTNVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAElectron microscopy3.0952024-01-24

Release history

Release3.3783.3793.3803.381
Date2025-03-132025-03-192025-03-262025-04-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18OPE|1|BdVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
28OPE|1|AzVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
38OPE|1|BpVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
48OPE|1|BbVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
58OPE|1|AjVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
68OPE|1|BlVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
78OPE|1|BfVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
88OPE|1|AtVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
98OPE|1|AxVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
108OPE|1|AhVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
118OPE|1|AfVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
128OPE|1|AdVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
138OPE|1|AnVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
148OPE|1|BhVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
158OPE|1|AlVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
168OPE|1|AvVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
178OPE|1|ApVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
188OPE|1|BnVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
198OPE|1|AbVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
208OPE|1|ArVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
218OPE|1|BjVirus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNAELECTRON MICROSCOPY3.095
228OPL|1|AnVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
238OPL|1|BvVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
248OPL|1|BbVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
258OPL|1|AkVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
268OPL|1|BtVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
278OPL|1|BcVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
288OPL|1|BhVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
298OPL|1|ArVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
308OPL|1|ByVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
318OPL|1|ApVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
328OPL|1|BeVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
338OPL|1|BwVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
348OPL|1|AqVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
358OPL|1|AoVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
368OPL|1|BfVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
378OPL|1|CbVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
388OPL|1|BuVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
398OPL|1|BzVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
408OPL|1|AlVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
418OPL|1|BiVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
428OPL|1|BjVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
438OPL|1|BdVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
448OPL|1|BxVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
458OPL|1|BgVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
468OPL|1|CaVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
478OPL|1|AjVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415
488OPL|1|AmVirus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNAELECTRON MICROSCOPY2.415

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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