#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16Q1H|1|D (rep)RNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.4532019-12-25
26Q1H|1|HRNA (5'-R(P*AP*AP*A)-3')Pseudomonas aeruginosaStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-ray diffraction1.4532019-12-25
36P7P|1|FCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
46P7P|1|ECyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
56P7P|1|DCyclic tri-AMP (5'-3' linked)Escherichia coliStructure of E. coli MS115-1 NucC, cAAA-bound formX-ray diffraction1.6632019-12-25
67ZGV|1|DRNA (5'-R(P*AP*AP*A)-3')SerratiaSerratia NucC bound to cA3X-ray diffraction1.4832022-10-26
77SOQ|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.1532022-08-03
87SOR|1|DRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.3532022-08-03
97SOR|1|BRNA (5'-R(*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAA RNAX-ray diffraction1.3532022-08-03
106VM6|1|J2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
116VM6|1|G2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
126WAN|1|KCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
138KBF|1|D(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-ray diffraction2.3132024-08-07
146WAN|1|HCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
156WAN|1|GCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
166WAN|1|LCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
176WAN|1|ICyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
188KBF|1|C(2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDEsynthetic constructStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-ray diffraction2.3132024-08-07
196YWO|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
206WAN|1|JCyclic RNA (R(P*AP*AP*A)synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-ray diffraction2.432020-06-17
214OAU|1|ARNA (5'-R(P*A*AP*A)-2')Complete human RNase L in complex with biological activators.X-ray diffraction2.632014-03-12
226YWO|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
236YWO|1|KRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
246VM6|1|I2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
256VM6|1|H2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
266YWO|1|IRNA (5'-R(*AP*AP*A)-3')synthetic constructCutA in complex with A3 RNAX-ray diffraction1.932020-08-05
272A1R|1|C5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-ray diffraction2.632005-12-20
286M6V|1|FRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
296M6V|1|ERNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
302A1R|1|D5'-R(*AP*AP*A)-3'Crystal structure of PARN nuclease domainX-ray diffraction2.632005-12-20
313GPQ|1|ERNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction222009-07-21
323GPQ|1|FRNA (5'-R(*AP*AP*A)-3')Crystal structure of macro domain of Chikungunya virus in complex with RNAX-ray diffraction222009-07-21
336O79|1|Ccyclic RNA cA3synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA3X-ray diffraction332019-07-31
346VM6|1|K2'-5'-Linked Cyclic RNA (5'-R(P*AP*AP*A)-3')synthetic constructStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-ray diffraction2.132020-06-17
356M6V|1|GRNA (5'-R(P*AP*AP*A)-3')Escherichia coliCrystal structure the toxin-antitoxin MntA-HepTX-ray diffraction3.0832020-09-30
366HYU|1|DRNA (5'-R(*A*AP*A)-3')synthetic constructCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-ray diffraction3.2232019-08-28
371LAJ|1|R5'-R(*AP*AP*A)-3'The Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-ray diffraction3.432002-11-27
388TL0|1|ERNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
398ZWJ|1|FRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 1Electron microscopy3.132024-07-03
408TL0|1|FRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
418TL0|1|GRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
428TL0|1|HRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
438TL0|1|JRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
448TL0|1|MRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
458TL0|1|NRNA (5'-R(*AP*AP*A)-3')synthetic constructStructure of activated SAVED-CHAT filamentElectron microscopy3.132024-03-06
468ZWJ|1|QRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 1Electron microscopy3.132024-07-03
478ZWK|1|GRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 2Electron microscopy3.432024-07-03
488ZWK|1|QRNA (5'-R(P*AP*AP*A)-3')Homo sapiensPolyadenylic acid bound alpha-synuclein fibril Polymorph 2Electron microscopy3.432024-07-03
497QQK|1|FRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3Electron microscopy3.832022-06-15
507QQK|1|GRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3Electron microscopy3.832022-06-15
517QQK|1|HRNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3Electron microscopy3.832022-06-15
526YBV|1|kmRNAHomo sapiensStructure of a human 48S translational initiation complex - eIF2-TCElectron microscopy3.832020-09-16
537QQK|1|ERNA (5'-R(P*AP*AP*A)-3')Microbacterium ketosireducensTIR-SAVED effector bound to cA3Electron microscopy3.832022-06-15

Release history

Release3.3473.348
Date2024-08-072024-08-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16HYU|1|DCrystal structure of DHX8 helicase bound to single stranded poly-adenine RNAX-RAY DIFFRACTION3.223
27SOQ|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.153
37SOR|1|BLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
47SOR|1|DLaM domain of human LARP1 in complex with AAA RNAX-RAY DIFFRACTION1.353
58KBF|1|DStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-RAY DIFFRACTION2.313
68KBF|1|CStructure of CbTad1 complexed with 1',3'-cADPR and cA3X-RAY DIFFRACTION2.313
77ZGV|1|DSerratia NucC bound to cA3X-RAY DIFFRACTION1.483
86P7P|1|FStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
96P7P|1|EStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
106P7P|1|DStructure of E. coli MS115-1 NucC, cAAA-bound formX-RAY DIFFRACTION1.663
116Q1H|1|DStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
126Q1H|1|HStructure of P. aeruginosa ATCC27853 NucC, cAAA-bound formX-RAY DIFFRACTION1.453
138TL0|1|HStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
148TL0|1|GStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
158TL0|1|JStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
168TL0|1|FStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
178TL0|1|EStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
188TL0|1|NStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
198TL0|1|MStructure of activated SAVED-CHAT filamentELECTRON MICROSCOPY3.13
207QQK|1|HTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
216WAN|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
226VM6|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
236VM6|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
246VM6|1|GStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
256VM6|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
266VM6|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAAX-RAY DIFFRACTION2.13
277QQK|1|FTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
287QQK|1|ETIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
297QQK|1|GTIR-SAVED effector bound to cA3ELECTRON MICROSCOPY3.83
306WAN|1|LStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
316WAN|1|JStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
326WAN|1|HStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
336WAN|1|IStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
346WAN|1|KStructure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAAX-RAY DIFFRACTION2.43
356O79|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA3X-RAY DIFFRACTION33
366M6V|1|GCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
371LAJ|1|RThe Structure of Tomato Aspermy Virus by X-Ray CrystallographyX-RAY DIFFRACTION3.43
388ZWJ|1|QPolyadenylic acid bound alpha-synuclein fibril Polymorph 1ELECTRON MICROSCOPY3.13
398ZWJ|1|FPolyadenylic acid bound alpha-synuclein fibril Polymorph 1ELECTRON MICROSCOPY3.13
408ZWK|1|GPolyadenylic acid bound alpha-synuclein fibril Polymorph 2ELECTRON MICROSCOPY3.43
418ZWK|1|QPolyadenylic acid bound alpha-synuclein fibril Polymorph 2ELECTRON MICROSCOPY3.43
426YBV|1|kStructure of a human 48S translational initiation complex - eIF2-TCELECTRON MICROSCOPY3.83
434OAU|1|AComplete human RNase L in complex with biological activators.X-RAY DIFFRACTION2.63
446M6V|1|ECrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
456M6V|1|FCrystal structure the toxin-antitoxin MntA-HepTX-RAY DIFFRACTION3.083
466YWO|1|KCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
476YWO|1|ECutA in complex with A3 RNAX-RAY DIFFRACTION1.93
486YWO|1|ICutA in complex with A3 RNAX-RAY DIFFRACTION1.93
496YWO|1|FCutA in complex with A3 RNAX-RAY DIFFRACTION1.93
502A1R|1|DCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
512A1R|1|CCrystal structure of PARN nuclease domainX-RAY DIFFRACTION2.63
523GPQ|1|FCrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22
533GPQ|1|ECrystal structure of macro domain of Chikungunya virus in complex with RNAX-RAY DIFFRACTION22

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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