RNA 3D Hub //

Equivalence class NR_4.0_66287.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18OZI|1|I+ 8OZI|1|J (rep)DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex pre-NAD cleavageElectron microscopy3.22342023-08-16
28OZI|1|K+ 8OZI|1|LDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex pre-NAD cleavageElectron microscopy3.22342023-08-16
38OZI|1|M+ 8OZI|1|ODNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex pre-NAD cleavageElectron microscopy3.22342023-08-16
48OZG|1|I+ 8OZG|1|JDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1Electron microscopy3.37342023-08-16
58OZG|1|K+ 8OZG|1|LDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1Electron microscopy3.37342023-08-16
68OZG|1|N+ 8OZG|1|PDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1Electron microscopy3.37342023-08-16
78OZI|1|N+ 8OZI|1|PDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex pre-NAD cleavageElectron microscopy3.22342023-08-16
88OZG|1|O+ 8OZG|1|QDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1Electron microscopy3.37342023-08-16
98OZF|1|I+ 8OZF|1|JDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2Electron microscopy3.73342023-08-16
108OZF|1|K+ 8OZF|1|LDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2Electron microscopy3.73342023-08-16
118OZF|1|N+ 8OZF|1|PDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2Electron microscopy3.73342023-08-16
128OZF|1|O+ 8OZF|1|QDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2Electron microscopy3.73342023-08-16
138OZD|1|F+ 8OZD|1|EDNA (16-MER), RNA (18-MER)Maribacter polysiphoniaecryoEM structure of SPARTA complex dimer-3Electron microscopy3.89342023-08-16
148OZD|1|I+ 8OZD|1|JDNA (16-MER), RNA (18-MER)Maribacter polysiphoniaecryoEM structure of SPARTA complex dimer-3Electron microscopy3.89342023-08-16
158OZ6|1|K+ 8OZ6|1|LDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex ligand-freeElectron microscopy3.97342023-08-16
168OZ6|1|I+ 8OZ6|1|JDNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex ligand-freeElectron microscopy3.97342023-08-16
178OZ6|1|M+ 8OZ6|1|ODNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex ligand-freeElectron microscopy3.97342023-08-16
188OZ6|1|NRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')Maribacter polysiphoniaecryoEM structure of SPARTA complex ligand-freeElectron microscopy3.97182023-08-16

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18OZ6|1|I+ 8OZ6|1|JcryoEM structure of SPARTA complex ligand-freeELECTRON MICROSCOPY3.9734
28OZ6|1|NcryoEM structure of SPARTA complex ligand-freeELECTRON MICROSCOPY3.9718
38OZ6|1|K+ 8OZ6|1|LcryoEM structure of SPARTA complex ligand-freeELECTRON MICROSCOPY3.9734
48OZF|1|I+ 8OZF|1|JcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2ELECTRON MICROSCOPY3.7334
58OZ6|1|M+ 8OZ6|1|OcryoEM structure of SPARTA complex ligand-freeELECTRON MICROSCOPY3.9734
68OZF|1|K+ 8OZF|1|LcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2ELECTRON MICROSCOPY3.7334
78OZG|1|N+ 8OZG|1|PcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1ELECTRON MICROSCOPY3.3734
88OZG|1|K+ 8OZG|1|LcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1ELECTRON MICROSCOPY3.3734
98OZG|1|I+ 8OZG|1|JcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1ELECTRON MICROSCOPY3.3734
108OZD|1|F+ 8OZD|1|EcryoEM structure of SPARTA complex dimer-3ELECTRON MICROSCOPY3.8934
118OZD|1|I+ 8OZD|1|JcryoEM structure of SPARTA complex dimer-3ELECTRON MICROSCOPY3.8934
128OZI|1|I+ 8OZI|1|JcryoEM structure of SPARTA complex pre-NAD cleavageELECTRON MICROSCOPY3.2234
138OZF|1|O+ 8OZF|1|QcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2ELECTRON MICROSCOPY3.7334
148OZG|1|O+ 8OZG|1|QcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1ELECTRON MICROSCOPY3.3734
158OZI|1|M+ 8OZI|1|OcryoEM structure of SPARTA complex pre-NAD cleavageELECTRON MICROSCOPY3.2234
168OZF|1|N+ 8OZF|1|PcryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2ELECTRON MICROSCOPY3.7334
178OZI|1|N+ 8OZI|1|PcryoEM structure of SPARTA complex pre-NAD cleavageELECTRON MICROSCOPY3.2234
188OZI|1|K+ 8OZI|1|LcryoEM structure of SPARTA complex pre-NAD cleavageELECTRON MICROSCOPY3.2234

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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