#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19TQA|1|Y (rep)Transfer RNAA-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNAElectron microscopy2.06722026-05-20
228UI|1|YTransfer RNAA-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNAElectron microscopy2.1722026-05-20
39TMI|1|YTransfer RNAA-site Val-tRNA, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome with A- and P-site tRNAElectron microscopy2.08722026-05-20
428UM|1|YTransfer RNAA-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNAElectron microscopy2.15722026-05-20
528UK|1|YTransfer RNAA-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNAElectron microscopy2.24722026-05-20
67EQJ|1|BTransfer RNARNA (76-MER)Escherichia coliBacteriaRF00005crystal structure of E. coli Valine tRNAX-ray diffraction2.043752022-01-19
77EQJ|1|ATransfer RNARNA (76-MER)Escherichia coliBacteriaRF00005crystal structure of E. coli Valine tRNAX-ray diffraction2.043762022-01-19
89B51|1|AWTransfer RNAtRNA-ValEscherichia coliBacteriaRF00005E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)Electron microscopy2.4742025-08-27
928UH|1|YTransfer RNAA/P-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNAElectron microscopy2.06722026-05-20
1028UJ|1|YTransfer RNAA/P-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNAElectron microscopy2.16722026-05-20
119B4Z|1|AWTransfer RNAtRNA-ValEscherichia coliBacteriaRF00005E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)Electron microscopy2.2742025-08-27
129TNL|1|YTransfer RNAA/P-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome with A/P- and P/E-site tRNAElectron microscopy2.11722026-05-20
136OF1|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-ray diffraction2.8732019-04-17
146CAE|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6742018-04-18
155IBB|1|1KTransfer RNAmRNA, tRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96722016-05-25
168URM|1|6Transfer RNAtRNA ValEscherichia coliBacteriaRF00005E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A siteElectron microscopy3762025-07-09
179NL5|1|TTransfer RNAtRNAEscherichia coliBacteriaRF00005E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformationElectron microscopy3762025-04-02
186O97|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-ray diffraction2.75732019-04-17
196OF1|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-ray diffraction2.8732019-04-17
206OF1|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-ray diffraction2.8732019-04-17
216CAE|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
229B4Z|1|AYTransfer RNAtRNA-ValEscherichia coliBacteriaRF00005E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)Electron microscopy2.2742025-08-27
236O97|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-ray diffraction2.75732019-04-17
246CAE|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
256CAE|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.6732018-04-18
266ND6|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85742019-02-20
276OF1|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-ray diffraction2.8732019-04-17
285IBB|1|3LTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96712016-05-25
296BY1|1|AWTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
306ND6|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
316O97|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-ray diffraction2.75732019-04-17
326BY1|1|BWTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
336O97|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-ray diffraction2.75732019-04-17
346BY1|1|BVTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
356BY1|1|AVTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
366ND6|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
377K00|1|YTransfer RNAA-site tRNA-val, mRNAEscherichia coliBacteriaRF00005Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.98742020-09-23
389B51|1|AYTransfer RNAtRNA-ValEscherichia coliBacteriaRF00005E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)Electron microscopy2.4742025-08-27
395IBB|1|3KTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.96702016-05-25
406ND6|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-ray diffraction2.85732019-02-20
416N1D|1|BPTNTransfer RNAP-tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.2762019-04-03
429NJF|1|TTransfer RNAtRNAEscherichia coliBacteriaRF00005E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformationElectron microscopy3.4762025-04-02
4328UL|1|YTransfer RNAA/P-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNAElectron microscopy2.5722026-05-20
446N1D|1|APTNTransfer RNAmRNA, P-tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.2762019-04-03
4528UN|1|YTransfer RNAA/P-site Val-tRNA^Val, mRNAEscherichia coliBacteriaRF00005E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNAElectron microscopy2.48722026-05-20
467B5K|1|9Transfer RNAE-site val tRNA (76-MER)Escherichia coli K-12BacteriaRF00005E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.Electron microscopy2.9762021-05-26
476BY1|1|AYTransfer RNAMessenger RNA, Valine-specific transfer RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-ray diffraction3.94762019-02-27
488PEG|1|YTransfer RNAmRNA, tRNA-Val (A-site)Escherichia coliBacteriaRF00005Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)Electron microscopy3.3762024-03-06
498R3V|1|Y1Transfer RNAmessenger RNA, tRNA-Val (A-site)Escherichia coliBacteriaRF00005Escherichia coli paused disome complex (non-rotated disome interface)Electron microscopy3.28362024-03-06
508RCL|1|Y1Transfer RNAmessenger RNA, tRNA-Val (A-site)Escherichia coliBacteriaRF00005Escherichia coli paused disome complex (Non-rotated disome interface class 1)Electron microscopy3.49362024-03-13
518RCM|1|Y1Transfer RNAmessenger RNA, tRNA-Val (A-site)Escherichia coliBacteriaRF00005Escherichia coli paused disome complex (Non-rotated disome interface class 2)Electron microscopy3.59362024-03-06

Release history

Release4.40
Date2026-05-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15IBB|1|1KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9672
26ND6|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
36O97|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-RAY DIFFRACTION2.7573
46OF1|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-RAY DIFFRACTION2.873
56CAE|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
66CAE|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
76ND6|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
86OF1|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-RAY DIFFRACTION2.873
96O97|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-RAY DIFFRACTION2.7573
107K00|1|YStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.9874
118URM|1|6E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A siteELECTRON MICROSCOPY376
129B51|1|AWE. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)ELECTRON MICROSCOPY2.474
139TMI|1|YE. coli 70S ribosome with A- and P-site tRNAELECTRON MICROSCOPY2.0872
1428UI|1|YE. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNAELECTRON MICROSCOPY2.172
159TQA|1|YE. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNAELECTRON MICROSCOPY2.0672
1628UM|1|YE. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNAELECTRON MICROSCOPY2.1572
1728UK|1|YE. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNAELECTRON MICROSCOPY2.2472
188R3V|1|Y1Escherichia coli paused disome complex (non-rotated disome interface)ELECTRON MICROSCOPY3.2836
198PEG|1|YEscherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)ELECTRON MICROSCOPY3.376
208RCL|1|Y1Escherichia coli paused disome complex (Non-rotated disome interface class 1)ELECTRON MICROSCOPY3.4936
218RCM|1|Y1Escherichia coli paused disome complex (Non-rotated disome interface class 2)ELECTRON MICROSCOPY3.5936
2228UL|1|YE. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNAELECTRON MICROSCOPY2.572
2328UN|1|YE. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNAELECTRON MICROSCOPY2.4872
249TNL|1|YE. coli 70S ribosome with A/P- and P/E-site tRNAELECTRON MICROSCOPY2.1172
2528UH|1|YE. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNAELECTRON MICROSCOPY2.0672
2628UJ|1|YE. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNAELECTRON MICROSCOPY2.1672
279B4Z|1|AWE. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)ELECTRON MICROSCOPY2.274
286BY1|1|AVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
296BY1|1|BVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
306BY1|1|BWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
319NJF|1|TE. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformationELECTRON MICROSCOPY3.476
329NL5|1|TE. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformationELECTRON MICROSCOPY376
336BY1|1|AWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
346BY1|1|AYE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
359B51|1|AYE. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)ELECTRON MICROSCOPY2.474
369B4Z|1|AYE. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)ELECTRON MICROSCOPY2.274
376OF1|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-RAY DIFFRACTION2.873
386CAE|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.673
396ND6|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8573
406O97|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-RAY DIFFRACTION2.7573
416O97|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolutionX-RAY DIFFRACTION2.7573
426CAE|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.674
436OF1|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolutionX-RAY DIFFRACTION2.873
446ND6|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8574
457EQJ|1|Bcrystal structure of E. coli Valine tRNAX-RAY DIFFRACTION2.04375
467EQJ|1|Acrystal structure of E. coli Valine tRNAX-RAY DIFFRACTION2.04376
475IBB|1|3KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9670
485IBB|1|3LStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9671
496N1D|1|BPTNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.276
506N1D|1|APTNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.276
517B5K|1|9E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.ELECTRON MICROSCOPY2.976

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0134 s