#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QI4|1|B (rep)Transfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.21722022-07-13
26ZM6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.59722021-01-13
37PO4|1|BTransfer RNAtRNAValHomo sapiensMitochondriaRF00005Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.56722022-06-15
47QI5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.63722023-07-05
56ZM5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.89722021-01-13
67ODR|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.9722021-06-23
78QSJ|1|BTransfer RNAtRNA-ValHomo sapiensMitochondriaRF00005Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7Electron microscopy3722023-12-13
88ANY|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.85722023-08-16
98PK0|1|BTransfer RNACP tRNA-ValHomo sapiensMitochondriaRF00005human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7Electron microscopy3.03722023-12-13
108OIT|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000539S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.9722023-06-14
117OF0|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.2562021-06-09
127ODT|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
137ODS|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
147QI6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.98722023-05-17
157O9M|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.5602021-06-30
168OIR|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000555S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.1722023-06-14
178QU5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2Electron microscopy2.42562024-06-26
187OF7|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.5562021-06-23
197OF6|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.6562021-06-09
207OF4|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.7562021-06-09
217OF3|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.7562021-05-19
227OF2|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.7562021-06-02
238QU1|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1Electron microscopy2.74562024-06-26
247O9K|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.1602021-06-30
258K2A|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with TigecyclineElectron microscopy2.9562024-07-10
267OF5|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.9562021-06-09
276VMI|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.96562020-08-05
286VLZ|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.97562020-08-05
297QH6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1Electron microscopy3.08562022-03-02
308XT1|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineElectron microscopy3.1562024-07-10
318XT3|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineElectron microscopy3.1562024-07-10
327A5J|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.1562020-12-23
337OIC|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.1562021-09-15
345OOL|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.06562017-09-13
355OOM|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.03562017-09-13
367L20|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.15562021-05-12
377OIA|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.2562021-09-15
388XT0|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineElectron microscopy3.2562024-07-10
397OIB|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.3562021-09-15
408XT2|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineElectron microscopy3.3562024-07-10
417OI9|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.3562021-09-15
427A5H|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.3562020-12-23
438K2B|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with TigecyclineElectron microscopy3.4562024-07-10
446ZSC|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.5592020-09-16
457L08|1|BTransfer RNAtRNAVALHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.49562021-05-12
467OI7|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.5562021-09-15
477OIE|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.5562021-09-15
487OI8|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.5562021-09-15
496ZSD|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.7592020-09-16
506I9R|1|BTransfer RNAtRNA ValHomo sapiensMitochondriaRF00005Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinElectron microscopy3.9602020-07-08
517OID|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AElectron microscopy3.7562021-09-15
527A5I|1|B3Transfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.7562020-12-23
537A5K|1|B3Transfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.7562020-12-23
547OG4|1|XBTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.8592021-06-23
553J7Y|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.4572014-10-15
566ZS9|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy4592020-10-14
576ZSA|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy4592020-10-21
586ZSG|1|XBTransfer RNAmt-tRNA ValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy4592020-10-14
593J9M|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.5562015-04-15

Release history

Release3.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17QH6|1|BCryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.0856
27OIC|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.156
37A5H|1|BStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.356
47A5J|1|BStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.156
57OI8|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.556
67OID|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.756
77OIE|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.556
87OIB|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.356
97OI9|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.356
107OI7|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.556
117OIA|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.256
128QU1|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1ELECTRON MICROSCOPY2.7456
138QU5|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2ELECTRON MICROSCOPY2.4256
145OOM|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0356
155OOL|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0656
167OF7|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.556
177OF0|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.256
187OF3|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.756
197OF5|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.956
207OF2|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.756
217OF6|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.656
227OF4|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.756
238XT3|1|L2Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.156
248XT1|1|L2Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineELECTRON MICROSCOPY3.156
258K2B|1|L2Cryo-EM structure of the human 39S mitoribosome with TigecyclineELECTRON MICROSCOPY3.456
268XT2|1|L2Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.356
278XT0|1|L2Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineELECTRON MICROSCOPY3.256
288K2A|1|L2Cryo-EM structure of the human 55S mitoribosome with TigecyclineELECTRON MICROSCOPY2.956
297A5I|1|B3Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.756
307A5K|1|B3Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.756
313J7Y|1|BStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.457
323J9M|1|BStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.556
337L08|1|BCryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.4956
347L20|1|BCryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.1556
357O9M|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.560
366VLZ|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.9756
376VMI|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.9656
386I9R|1|BLarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.960
396ZSC|1|XBHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.559
407OG4|1|XBHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.859
416ZS9|1|XBHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY459
426ZSD|1|XBHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.759
436ZSA|1|XBHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY459
446ZSG|1|XBHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY459
457PO4|1|BAssembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.5672
467ODR|1|BState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.972
476ZM5|1|BHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.8972
486ZM6|1|BHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.5972
497ODS|1|BState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
507ODT|1|BState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
518PK0|1|Bhuman mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7ELECTRON MICROSCOPY3.0372
528QSJ|1|BHuman mitoribosomal large subunit assembly intermediate 2 with GTPBP7ELECTRON MICROSCOPY372
538ANY|1|BHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.8572
547QI5|1|BHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.6372
557QI4|1|BHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.2172
567QI6|1|BHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.9872
578OIT|1|B939S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.972
588OIR|1|B955S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.172
597O9K|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.160

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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