#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QI4|1|B (rep)Transfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.21722022-07-13
28RRI|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with antibiotic tigecyclineElectron microscopy2.4722025-03-12
37PO4|1|BTransfer RNAtRNAValHomo sapiensMitochondriaRF00005Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.56722022-06-15
46ZM6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.59722021-01-13
57QI5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.63722023-07-05
68ANY|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.85722023-08-16
76ZM5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.89722021-01-13
87ODR|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.9722021-06-23
98OIT|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000539S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.9722023-06-14
107QI6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.98722023-05-17
118QSJ|1|BTransfer RNAtRNA-ValHomo sapiensMitochondriaRF00005Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7Electron microscopy3722023-12-13
128PK0|1|BTransfer RNACP tRNA-ValHomo sapiensMitochondriaRF00005human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7Electron microscopy3.03722023-12-13
137OF0|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.2562021-06-09
147ODT|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State C of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
157ODS|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005State B of the human mitoribosomal large subunit assembly intermediateElectron microscopy3.1722021-06-23
168OIR|1|B9Transfer RNACP Val-tRNA(Val)Homo sapiensMitochondriaRF0000555S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.1722023-06-14
177O9M|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.5602021-06-30
188QU5|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2Electron microscopy2.42562024-06-26
197OF7|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.5562021-06-23
207OF6|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.6562021-06-09
219CN3|1|BTransfer RNAtRNAHomo sapiensMitochondriaRF00005Human 39S mitoribosome in complex with antibiotic LinezolidElectron microscopy2.62562025-04-23
227OF2|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.7562021-06-02
237OF3|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.7562021-05-19
247OF4|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.7562021-06-09
258QU1|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1Electron microscopy2.74562024-06-26
267O9K|1|BTransfer RNAMT-TRNAVALHomo sapiensMitochondriaRF00005Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuElectron microscopy3.1602021-06-30
278K2A|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with TigecyclineElectron microscopy2.9562024-07-10
287OF5|1|BTransfer RNAMitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.9562021-06-09
296VMI|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.96562020-08-05
306VLZ|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.97562020-08-05
317QH6|1|BTransfer RNAmitochondrial tRNAValHomo sapiensEukaryaRF00005Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1Electron microscopy3.08562022-03-02
328XT3|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineElectron microscopy3.1562024-07-10
338XT1|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineElectron microscopy3.1562024-07-10
347A5J|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsElectron microscopy3.1562020-12-23
357OIC|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4Electron microscopy3.1562021-09-15
365OOL|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.06562017-09-13
375OOM|1|BTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAElectron microscopy3.03562017-09-13
387L20|1|BTransfer RNAtRNAvalHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.Electron microscopy3.15562021-05-12
397OIA|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CElectron microscopy3.2562021-09-15
408XT0|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineElectron microscopy3.2562024-07-10
417OIB|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DElectron microscopy3.3562021-09-15
428XT2|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineElectron microscopy3.3562024-07-10
437OI9|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BElectron microscopy3.3562021-09-15
447A5H|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1Electron microscopy3.3562020-12-23
458K2B|1|L2Transfer RNAVal tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 39S mitoribosome with TigecyclineElectron microscopy3.4562024-07-10
466ZSC|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.5592020-09-16
477L08|1|BTransfer RNAtRNAVALHomo sapiensMitochondriaRF00005Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.49562021-05-12
487OI8|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AElectron microscopy3.5562021-09-15
497OIE|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BElectron microscopy3.5562021-09-15
507OI7|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2Electron microscopy3.5562021-09-15
516ZSD|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.7592020-09-16
526I9R|1|BTransfer RNAtRNA ValHomo sapiensMitochondriaRF00005Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinElectron microscopy3.9602020-07-08
537OID|1|BTransfer RNAmitochondrial Val tRNAHomo sapiensMitochondriaRF00005Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AElectron microscopy3.7562021-09-15
547A5K|1|B3Transfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.7562020-12-23
557A5I|1|B3Transfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.7562020-12-23
567OG4|1|XBTransfer RNAmitochondrial tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.8592021-06-23
573J7Y|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the large ribosomal subunit from human mitochondriaElectron microscopy3.4572014-10-15
586ZS9|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy4592020-10-14
596ZSA|1|XBTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy4592020-10-21
606ZSG|1|XBTransfer RNAmt-tRNA ValHomo sapiensMitochondriaRF00005Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy4592020-10-14
613J9M|1|BTransfer RNAmt-tRNAValHomo sapiensMitochondriaRF00005Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.5562015-04-15

Release history

Release3.3843.3853.3863.3873.3883.3893.3903.391
Date2025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17QH6|1|BCryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.0856
27OIC|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.156
33J9M|1|BStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.556
43J7Y|1|BStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.457
57A5K|1|B3Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.756
67A5I|1|B3Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.756
78K2A|1|L2Cryo-EM structure of the human 55S mitoribosome with TigecyclineELECTRON MICROSCOPY2.956
88XT0|1|L2Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineELECTRON MICROSCOPY3.256
98XT2|1|L2Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.356
108K2B|1|L2Cryo-EM structure of the human 39S mitoribosome with TigecyclineELECTRON MICROSCOPY3.456
118XT1|1|L2Cryo-EM structure of the human 39S mitoribosome with 5uM TigecyclineELECTRON MICROSCOPY3.156
128XT3|1|L2Cryo-EM structure of the human 39S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.156
137A5H|1|BStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.356
147A5J|1|BStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.156
157OI8|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.556
167OID|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.756
177OIE|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.556
187OIB|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.356
197OI9|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.356
207OI7|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.556
217OIA|1|BCryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.256
228QU1|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1ELECTRON MICROSCOPY2.7456
238QU5|1|Bmt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2ELECTRON MICROSCOPY2.4256
245OOM|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0356
255OOL|1|BStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.0656
267OF7|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.556
277OF0|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.256
287OF3|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.756
297OF5|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.956
307OF2|1|BStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.756
317OF6|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.656
327OF4|1|BStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.756
339CN3|1|BHuman 39S mitoribosome in complex with antibiotic LinezolidELECTRON MICROSCOPY2.6256
347L20|1|BCryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.1556
357L08|1|BCryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.4956
367O9M|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.560
376VLZ|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.9756
386VMI|1|BStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.9656
396I9R|1|BLarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.960
406ZS9|1|XBHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY459
417OG4|1|XBHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.859
426ZSC|1|XBHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.559
436ZSD|1|XBHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.759
446ZSA|1|XBHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY459
456ZSG|1|XBHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY459
468QSJ|1|BHuman mitoribosomal large subunit assembly intermediate 2 with GTPBP7ELECTRON MICROSCOPY372
478PK0|1|Bhuman mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7ELECTRON MICROSCOPY3.0372
487ODT|1|BState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
496ZM6|1|BHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.5972
506ZM5|1|BHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.8972
517ODS|1|BState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.172
527ODR|1|BState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.972
537PO4|1|BAssembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.5672
548RRI|1|BHuman mitochondrial ribosome in complex with antibiotic tigecyclineELECTRON MICROSCOPY2.472
557QI6|1|BHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.9872
567QI4|1|BHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.2172
577QI5|1|BHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.6372
588ANY|1|BHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.8572
598OIR|1|B955S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.172
608OIT|1|B939S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.972
617O9K|1|BHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.160

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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