RNA 3D Hub //

Equivalence class NR_4.0_74023.13 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18P2G|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateElectron microscopy2.0215342024-05-01
26S0X|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.4215392019-08-21
38P2F|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateElectron microscopy2.4415262024-05-01
48P2H|1|aSmall subunit ribosomal RNA16S ribosomal RNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateElectron microscopy2.4915342024-05-01
58Y38|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.Electron microscopy2.5814792024-07-24
65NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.915392017-10-04
78BYV|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Cryo-EM structure of a Staphylococus aureus 30S-RbfA complexElectron microscopy2.8915332023-12-27
87P48|1|aSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.914792022-02-02
97ASP|1|XSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.8614472021-11-17
107NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.115382021-05-05
117NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.115312021-05-05
126YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.215452021-01-27
137ASO|1|XSmall subunit ribosomal RNA16SStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.1114152021-11-17
146S13|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.5815392019-08-21
158BH6|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Mature 30S ribosomal subunit from Staphylococcus aureusElectron microscopy3.715472023-09-20
165ND8|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.715422017-06-28
175ND9|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.715412017-06-28
187KWG|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidineElectron microscopy3.7515522021-01-27
198Y39|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.Electron microscopy3.614792024-07-24
205LI0|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.815472016-12-28
215T7V|1|ASmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.614192017-05-31
227BGD|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)Electron microscopy3.210962021-12-08
235TCU|1|ASmall subunit ribosomal RNA16S RRNAStaphylococcus aureusBacteriaRF00177Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.914642017-05-24
247BGE|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)Electron microscopy3.64652021-12-08

Release history

Release3.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18BYV|1|aCryo-EM structure of a Staphylococus aureus 30S-RbfA complexELECTRON MICROSCOPY2.891533
27BGE|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)ELECTRON MICROSCOPY3.6465
38P2G|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.021534
48P2H|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.491534
57BGD|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)ELECTRON MICROSCOPY3.21096
67KWG|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.751552
78BH6|1|aMature 30S ribosomal subunit from Staphylococcus aureusELECTRON MICROSCOPY3.71547
85ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
96YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21545
105ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
115LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
127NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
137NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
148P2F|1|aStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateELECTRON MICROSCOPY2.441526
158Y39|1|acryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.ELECTRON MICROSCOPY3.61479
168Y38|1|aCryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.ELECTRON MICROSCOPY2.581479
177P48|1|aStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.91479
185TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
195T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419
205NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
216S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
226S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
237ASO|1|XStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.111415
247ASP|1|XStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.861447

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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