RNA 3D Hub //

Equivalence class NR_4.0_79027.1 Current

Showing 1 to 8 of 8 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QQX|1|A+ 7QQX|1|C+ 7QQX|1|D (rep)Trans-activating crRNAFANCF off-target5 non-target strand, FANCF off-target5 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target5 DNA substrateX-ray diffraction2.41232022-10-26
27QQS|1|A+ 7QQS|1|C+ 7QQS|1|DTrans-activating crRNAFANCF on-target non-target strand, FANCF on-target target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF on-target DNA substrateX-ray diffraction2.41232022-10-26
37QQU|1|A+ 7QQU|1|C+ 7QQU|1|DTrans-activating crRNAFANCF off-target2 non-target strand, FANCF off-target2 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target2 DNA substrateX-ray diffraction2.451232022-10-26
47QQT|1|A+ 7QQT|1|C+ 7QQT|1|DTrans-activating crRNAFANCF off-target1 non-target strand, FANCF off-target1 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target1 DNA substrateX-ray diffraction2.51232022-10-26
57QQW|1|A+ 7QQW|1|C+ 7QQW|1|DTrans-activating crRNAFANCF off-target4 non-target strand, FANCF off-target4 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target4 DNA substrateX-ray diffraction3.11182022-10-26
67QQZ|1|A+ 7QQZ|1|C+ 7QQZ|1|DTrans-activating crRNAFANCF off-target7 non-target strand, FANCF off-target7 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target7 DNA substrateX-ray diffraction2.251222022-10-26
77QR5|1|A+ 7QR5|1|C+ 7QR5|1|DTrans-activating crRNAFANCF off-target6 non-target strand, FANCF off-target6 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target6 DNA substrateX-ray diffraction3.31232022-10-26
87QQV|1|A+ 7QQV|1|C+ 7QQV|1|DTrans-activating crRNAFANCF off-target3 non-target strand, FANCF off-target3 target strand, FANCF sgRNAsynthetic constructSyntheticRF02348SpCas9 bound to FANCF off-target3 DNA substrateX-ray diffraction2.251232022-10-26

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 8 of 8 entries
#SViewPDBTitleMethodResolution#NTs
17QQX|1|A+ 7QQX|1|C+ 7QQX|1|DSpCas9 bound to FANCF off-target5 DNA substrateX-RAY DIFFRACTION2.4123
27QQS|1|A+ 7QQS|1|C+ 7QQS|1|DSpCas9 bound to FANCF on-target DNA substrateX-RAY DIFFRACTION2.4123
37QQU|1|A+ 7QQU|1|C+ 7QQU|1|DSpCas9 bound to FANCF off-target2 DNA substrateX-RAY DIFFRACTION2.45123
47QQV|1|A+ 7QQV|1|C+ 7QQV|1|DSpCas9 bound to FANCF off-target3 DNA substrateX-RAY DIFFRACTION2.25123
57QQT|1|A+ 7QQT|1|C+ 7QQT|1|DSpCas9 bound to FANCF off-target1 DNA substrateX-RAY DIFFRACTION2.5123
67QR5|1|A+ 7QR5|1|C+ 7QR5|1|DSpCas9 bound to FANCF off-target6 DNA substrateX-RAY DIFFRACTION3.3123
77QQZ|1|A+ 7QQZ|1|C+ 7QQZ|1|DSpCas9 bound to FANCF off-target7 DNA substrateX-RAY DIFFRACTION2.25122
87QQW|1|A+ 7QQW|1|C+ 7QQW|1|DSpCas9 bound to FANCF off-target4 DNA substrateX-RAY DIFFRACTION3.1118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

7QQX|1|A+7QQX|1|C+7QQX|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 07QQX|1|A+7QQX|1|C+7QQX|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.09377QQX|1|A+7QQX|1|C+7QQX|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.10077QQX|1|A+7QQX|1|C+7QQX|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.13357QQX|1|A+7QQX|1|C+7QQX|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.10047QQX|1|A+7QQX|1|C+7QQX|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.10137QQX|1|A+7QQX|1|C+7QQX|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.10577QQX|1|A+7QQX|1|C+7QQX|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.20727QQS|1|A+7QQS|1|C+7QQS|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.09377QQS|1|A+7QQS|1|C+7QQS|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 07QQS|1|A+7QQS|1|C+7QQS|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.03057QQS|1|A+7QQS|1|C+7QQS|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.04937QQS|1|A+7QQS|1|C+7QQS|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.05067QQS|1|A+7QQS|1|C+7QQS|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.05427QQS|1|A+7QQS|1|C+7QQS|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.06097QQS|1|A+7QQS|1|C+7QQS|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.19887QQU|1|A+7QQU|1|C+7QQU|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.10077QQU|1|A+7QQU|1|C+7QQU|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.03057QQU|1|A+7QQU|1|C+7QQU|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 07QQU|1|A+7QQU|1|C+7QQU|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.04937QQU|1|A+7QQU|1|C+7QQU|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.05737QQU|1|A+7QQU|1|C+7QQU|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.05957QQU|1|A+7QQU|1|C+7QQU|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.06127QQU|1|A+7QQU|1|C+7QQU|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.19417QQV|1|A+7QQV|1|C+7QQV|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.13357QQV|1|A+7QQV|1|C+7QQV|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.04937QQV|1|A+7QQV|1|C+7QQV|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.04937QQV|1|A+7QQV|1|C+7QQV|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 07QQV|1|A+7QQV|1|C+7QQV|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.06327QQV|1|A+7QQV|1|C+7QQV|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.07697QQV|1|A+7QQV|1|C+7QQV|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.07767QQV|1|A+7QQV|1|C+7QQV|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.21067QQT|1|A+7QQT|1|C+7QQT|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.10047QQT|1|A+7QQT|1|C+7QQT|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.05067QQT|1|A+7QQT|1|C+7QQT|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.05737QQT|1|A+7QQT|1|C+7QQT|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.06327QQT|1|A+7QQT|1|C+7QQT|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 07QQT|1|A+7QQT|1|C+7QQT|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.04687QQT|1|A+7QQT|1|C+7QQT|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.05387QQT|1|A+7QQT|1|C+7QQT|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.19757QR5|1|A+7QR5|1|C+7QR5|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.10137QR5|1|A+7QR5|1|C+7QR5|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.05427QR5|1|A+7QR5|1|C+7QR5|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.05957QR5|1|A+7QR5|1|C+7QR5|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.07697QR5|1|A+7QR5|1|C+7QR5|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.04687QR5|1|A+7QR5|1|C+7QR5|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 07QR5|1|A+7QR5|1|C+7QR5|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.05057QR5|1|A+7QR5|1|C+7QR5|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.19527QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.10577QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.06097QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.06127QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.07767QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.05387QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.05057QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 07QQZ|1|A+7QQZ|1|C+7QQZ|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 0.19247QQW|1|A+7QQW|1|C+7QQW|1|D:7QQX|1|A+7QQX|1|C+7QQX|1|D = 0.20727QQW|1|A+7QQW|1|C+7QQW|1|D:7QQS|1|A+7QQS|1|C+7QQS|1|D = 0.19887QQW|1|A+7QQW|1|C+7QQW|1|D:7QQU|1|A+7QQU|1|C+7QQU|1|D = 0.19417QQW|1|A+7QQW|1|C+7QQW|1|D:7QQV|1|A+7QQV|1|C+7QQV|1|D = 0.21067QQW|1|A+7QQW|1|C+7QQW|1|D:7QQT|1|A+7QQT|1|C+7QQT|1|D = 0.19757QQW|1|A+7QQW|1|C+7QQW|1|D:7QR5|1|A+7QR5|1|C+7QR5|1|D = 0.19527QQW|1|A+7QQW|1|C+7QQW|1|D:7QQZ|1|A+7QQZ|1|C+7QQZ|1|D = 0.19247QQW|1|A+7QQW|1|C+7QQW|1|D:7QQW|1|A+7QQW|1|C+7QQW|1|D = 07QQX|1|A+7QQX|1|C+7QQX|1|D7QQS|1|A+7QQS|1|C+7QQS|1|D7QQU|1|A+7QQU|1|C+7QQU|1|D7QQV|1|A+7QQV|1|C+7QQV|1|D7QQT|1|A+7QQT|1|C+7QQT|1|D7QR5|1|A+7QR5|1|C+7QR5|1|D7QQZ|1|A+7QQZ|1|C+7QQZ|1|D7QQW|1|A+7QQW|1|C+7QQW|1|DDiscrepancy0.000.050.100.150.20

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