RNA 3D Hub //

Equivalence class NR_4.0_79445.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18UIY|1|Pt (rep)Transfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-Z state 80S ribosomeElectron microscopy3.44762025-04-09
29B0Q|1|APTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
39B0Q|1|aPTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
48UIZ|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-E state 80S ribosomeElectron microscopy3.43742025-04-09
59B0S|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8742025-03-19
69B0S|1|aPTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8712025-03-19

Release history

Release3.382
Date2025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19B0S|1|PtIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.874
28UIZ|1|PtIn situ human P-E state 80S ribosomeELECTRON MICROSCOPY3.4374
38UIY|1|PtIn situ human P-Z state 80S ribosomeELECTRON MICROSCOPY3.4476
49B0S|1|aPIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.871
59B0Q|1|aPIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271
69B0Q|1|APIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

9B0S|1|Pt:9B0S|1|Pt = 09B0S|1|Pt:8UIZ|1|Pt = 0.03899B0S|1|Pt:8UIY|1|Pt = 0.04819B0S|1|Pt:9B0S|1|aP = 0.20069B0S|1|Pt:9B0Q|1|aP not available9B0S|1|Pt:9B0Q|1|AP not available8UIZ|1|Pt:9B0S|1|Pt = 0.03898UIZ|1|Pt:8UIZ|1|Pt = 08UIZ|1|Pt:8UIY|1|Pt = 0.04678UIZ|1|Pt:9B0S|1|aP not available8UIZ|1|Pt:9B0Q|1|aP not available8UIZ|1|Pt:9B0Q|1|AP not available8UIY|1|Pt:9B0S|1|Pt = 0.04818UIY|1|Pt:8UIZ|1|Pt = 0.04678UIY|1|Pt:8UIY|1|Pt = 08UIY|1|Pt:9B0S|1|aP not available8UIY|1|Pt:9B0Q|1|aP not available8UIY|1|Pt:9B0Q|1|AP not available9B0S|1|aP:9B0S|1|Pt = 0.20069B0S|1|aP:8UIZ|1|Pt not available9B0S|1|aP:8UIY|1|Pt not available9B0S|1|aP:9B0S|1|aP = 09B0S|1|aP:9B0Q|1|aP = 0.04499B0S|1|aP:9B0Q|1|AP = 0.05889B0Q|1|aP:9B0S|1|Pt not available9B0Q|1|aP:8UIZ|1|Pt not available9B0Q|1|aP:8UIY|1|Pt not available9B0Q|1|aP:9B0S|1|aP = 0.04499B0Q|1|aP:9B0Q|1|aP = 09B0Q|1|aP:9B0Q|1|AP = 0.05759B0Q|1|AP:9B0S|1|Pt not available9B0Q|1|AP:8UIZ|1|Pt not available9B0Q|1|AP:8UIY|1|Pt not available9B0Q|1|AP:9B0S|1|aP = 0.05889B0Q|1|AP:9B0Q|1|aP = 0.05759B0Q|1|AP:9B0Q|1|AP = 09B0S|1|Pt8UIZ|1|Pt8UIY|1|Pt9B0S|1|aP9B0Q|1|aP9B0Q|1|APDiscrepancy0.000.050.100.150.20

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0473 s