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Equivalence class NR_4.0_81815.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18T2Y|1|tA (rep)Transfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.2762024-12-11
28T2Y|1|tPTransfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.2752024-12-11
38T2Z|1|tATransfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.4762024-12-11
48T2Z|1|tPTransfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.4752024-12-11
58T2X|1|tATransfer RNAA site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.46762024-12-11
68T2X|1|tPTransfer RNAP site tRNASaccharomyces cerevisiaeEukaryaRF00005Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.46752024-12-11
76TB3|1|nTransfer RNAmRNA, tRNASaccharomyces cerevisiaeEukaryaRF00005yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.8752020-04-22
88UTI|1|nTransfer RNAP site initiator tRNASaccharomyces cerevisiaeEukaryaRF00005Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.13752024-11-06
98Z70|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.2752024-12-11
108UT0|1|nTransfer RNAP site initiator tRNASaccharomyces cerevisiaeEukaryaRF00005Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.22752024-11-06
118K82|1|C5Transfer RNAtRNASaccharomyces cerevisiaeEukaryaRF00005Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy3752024-07-10
127B7D|1|SmTransfer RNAmRNA, tRNASaccharomyces cerevisiae S288CEukaryaRF00005Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.3752021-03-10
137B7D|1|SnTransfer RNAmRNA, tRNASaccharomyces cerevisiae S288CEukaryaRF00005Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.3752021-03-10
146TNU|1|nTransfer RNAmRNA, P-site tRNASaccharomyces cerevisiaeEukaryaRF00005Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.1752020-04-22
156FYY|1|1Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)Electron microscopy3.02752018-12-05
168XU8|1|sTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.4752024-12-11
178XU8|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.4752024-12-11
188Z71|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingElectron microscopy3.6752024-12-11
198CAS|1|1Transfer RNAmRNA, tRNASaccharomyces cerevisiae W303EukaryaRF00005Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)Electron microscopy3.3752023-05-24
208RW1|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformationElectron microscopy3.35752024-09-11
218S8D|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)Electron microscopy3.45752024-09-11
226FYX|1|1Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)Electron microscopy3.5752018-12-05
237NRC|1|SnTransfer RNARNA (5'-R(P*AP*UP*GP*AP*AP*A)-3'), tRNA (75-MER)Saccharomyces cerevisiae S288CEukaryaRF00005Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AElectron microscopy3.9752021-05-05
248YLD|1|sTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationElectron microscopy3.9752024-12-11
258YLD|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationElectron microscopy3.9752024-12-11
268YLR|1|tTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationElectron microscopy3.9752024-12-11
278YLR|1|uTransfer RNAtRNASaccharomyces cerevisiae S288CEukaryaRF00005State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationElectron microscopy3.9742024-12-11
281YFG|1|ATransfer RNAYEAST INITIATOR TRNASaccharomyces cerevisiaeEukaryaRF00005YEAST INITIATOR TRNAX-ray diffraction3751997-09-03
298S8E|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)Electron microscopy3.85752024-09-11
308S8F|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)Electron microscopy3.95752024-09-11
318S8K|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)Electron microscopy4752024-11-06
328S8H|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)Electron microscopy4752024-09-11
338S8G|1|1Transfer RNAMet-tRNAiSaccharomyces cerevisiae S288CEukaryaRF00005Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)Electron microscopy4752024-09-11
343J81|1|1Met-tRNAi, mRNACryoEM structure of a partial yeast 48S preinitiation complexElectron microscopy4742014-11-05

Release history

Release3.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
13J81|1|1CryoEM structure of a partial yeast 48S preinitiation complexELECTRON MICROSCOPY474
28CAS|1|1Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)ELECTRON MICROSCOPY3.375
36FYX|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)ELECTRON MICROSCOPY3.575
46FYY|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)ELECTRON MICROSCOPY3.0275
58S8F|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)ELECTRON MICROSCOPY3.9575
68S8G|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)ELECTRON MICROSCOPY475
78S8D|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)ELECTRON MICROSCOPY3.4575
88S8E|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)ELECTRON MICROSCOPY3.8575
98RW1|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformationELECTRON MICROSCOPY3.3575
108S8K|1|1Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)ELECTRON MICROSCOPY475
118S8H|1|1Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)ELECTRON MICROSCOPY475
121YFG|1|AYEAST INITIATOR TRNAX-RAY DIFFRACTION375
138YLD|1|tState 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationELECTRON MICROSCOPY3.975
148YLR|1|uState 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationELECTRON MICROSCOPY3.974
158YLR|1|tState 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationELECTRON MICROSCOPY3.975
168YLD|1|sState 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationELECTRON MICROSCOPY3.975
177B7D|1|SmYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.375
188XU8|1|sState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.475
198T2Z|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.475
208T2Y|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.275
218T2X|1|tPHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.4675
228UT0|1|nEukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.2275
237NRC|1|SnStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.975
246TNU|1|nYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.175
258UTI|1|nEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.1375
268XU8|1|tState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.475
277B7D|1|SnYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.375
288Z71|1|tState 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingELECTRON MICROSCOPY3.675
298Z70|1|tState 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.275
308K82|1|C5Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY375
316TB3|1|nyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.875
328T2X|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.4676
338T2Y|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.276
348T2Z|1|tAHypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.476

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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