RNA 3D Hub //

Equivalence class NR_4.0_82920.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18QIE|1|1+ 8QIE|1|2+ 8QIE|1|4+ 8QIE|1|7 (rep)Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2, SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 mutant snoRNA overexpression, class 4Electron microscopy2.4331182025-01-01
28OVJ|1|1+ 8OVJ|1|2+ 8OVJ|1|4+ 8OVJ|1|7Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2, SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAINElectron microscopy2.430632024-05-08
38QHU|1|1+ 8QHU|1|2+ 8QHU|1|4+ 8QHU|1|7Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUb_rRNA_chain_2, RNA (1646-MER), SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 snoRNA overexpressionElectron microscopy2.7231832025-02-12
48A98|1|1+ 8A98|1|2+ 8A98|1|4+ 8A98|1|7Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2, SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANTElectron microscopy2.4629692023-10-11
58RXH|1|L1+ 8RXH|1|L2+ 8RXH|1|L4+ 8RXH|1|L7Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2, SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAINElectron microscopy2.9331822024-05-15
68RXX|1|L1+ 8RXX|1|L2+ 8RXX|1|L4+ 8RXX|1|L7Large subunit ribosomal RNA + Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2, SR2_chain_4Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAINElectron microscopy2.9731562024-05-15
78A3W|1|1+ 8A3W|1|2+ 8A3W|1|7Large subunit ribosomal RNA + Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S_rRNA_chain_7, LSUa_rRNA_chain_1, LSUb_rRNA_chain_2Leishmania major strain FriedlinEukaryaRF02543 + RF02543 + RF00002CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : WILD TYPEElectron microscopy2.8925772023-12-20

Release history

Release3.3813.382
Date2025-04-022025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18RXX|1|L1+ 8RXX|1|L2+ 8RXX|1|L4+ 8RXX|1|L7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAINELECTRON MICROSCOPY2.973156
28RXH|1|L1+ 8RXH|1|L2+ 8RXH|1|L4+ 8RXH|1|L7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAINELECTRON MICROSCOPY2.933182
38OVJ|1|1+ 8OVJ|1|2+ 8OVJ|1|4+ 8OVJ|1|7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAINELECTRON MICROSCOPY2.43063
48A3W|1|1+ 8A3W|1|2+ 8A3W|1|7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : WILD TYPEELECTRON MICROSCOPY2.892577
58A98|1|1+ 8A98|1|2+ 8A98|1|4+ 8A98|1|7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANTELECTRON MICROSCOPY2.462969
68QHU|1|1+ 8QHU|1|2+ 8QHU|1|4+ 8QHU|1|7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 snoRNA overexpressionELECTRON MICROSCOPY2.723183
78QIE|1|1+ 8QIE|1|2+ 8QIE|1|4+ 8QIE|1|7CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 mutant snoRNA overexpression, class 4ELECTRON MICROSCOPY2.433118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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