Equivalence class NR_4.0_83618.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8RRI|1|Ax (rep) | Transfer RNA | mRNA, P/P-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with antibiotic tigecycline | Electron microscopy | 2.4 | 70 | 2025-03-12 |
| 2 | 8ANY|1|Ax | Transfer RNA | mRNA, P/P-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | Electron microscopy | 2.85 | 70 | 2023-08-16 |
| 3 | 7QI5|1|Ax | Transfer RNA | mRNA, P/P-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | Electron microscopy | 2.63 | 70 | 2023-07-05 |
| 4 | 9VXM|1|Ax | Transfer RNA | mRNA, P/P-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs | Electron microscopy | 2.9 | 70 | 2026-07-22 |
| 5 | 7QI5|1|Ay | Transfer RNA | E/E-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | Electron microscopy | 2.63 | 70 | 2023-07-05 |
| 6 | 9RU6|1|Ax | Transfer RNA | P-site RNA (70-MER) | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | Electron microscopy | 2.64 | 70 | 2026-07-15 |
| 7 | 7QI4|1|Ax | Transfer RNA | mRNA, P/P-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 70 | 2022-07-13 |
| 8 | 8ANY|1|Ay | Transfer RNA | E/E-tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | Electron microscopy | 2.85 | 70 | 2023-08-16 |
| 9 | 9RU6|1|Ay | Transfer RNA | E-site tRNA (70-MER) | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | Electron microscopy | 2.64 | 55 | 2026-07-15 |
| 10 | 6ZM6|1|x | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 70 | 2021-01-13 |
| 11 | 6ZM5|1|x | Transfer RNA | mRNA, P-site tRNA | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 70 | 2021-01-13 |
Release history
| Release | 4.49 |
|---|---|
| Date | 2026-07-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8RRI|1|Ax | Human mitochondrial ribosome in complex with antibiotic tigecycline | ELECTRON MICROSCOPY | 2.4 | 70 | |
| 2 | 9VXM|1|Ax | Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs | ELECTRON MICROSCOPY | 2.9 | 70 | |
| 3 | 7QI4|1|Ax | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 70 | |
| 4 | 9RU6|1|Ax | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | ELECTRON MICROSCOPY | 2.64 | 70 | |
| 5 | 7QI5|1|Ax | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | ELECTRON MICROSCOPY | 2.63 | 70 | |
| 6 | 8ANY|1|Ax | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | ELECTRON MICROSCOPY | 2.85 | 70 | |
| 7 | 6ZM5|1|x | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 70 | |
| 8 | 6ZM6|1|x | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 70 | |
| 9 | 7QI5|1|Ay | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | ELECTRON MICROSCOPY | 2.63 | 70 | |
| 10 | 8ANY|1|Ay | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | ELECTRON MICROSCOPY | 2.85 | 70 | |
| 11 | 9RU6|1|Ay | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | ELECTRON MICROSCOPY | 2.64 | 55 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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