RNA 3D Hub //

Equivalence class NR_4.0_85152.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19P8B|1|Pt (rep)Transfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human eEF1A-A/T-P-E state 80S ribosomeElectron microscopy2.48742025-12-24
29PBE|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human 80S ribosome (composite map)Electron microscopy2.19742025-12-24
39P7O|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human AT-P-Z state ribosomeElectron microscopy2.65742025-12-24
49P72|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-E state 80S ribosomeElectron microscopy2.8742025-12-24
59P7K|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human post eEF1A-A/T-P-E state 80S ribosomeElectron microscopy2.8742025-12-24
69P7Y|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human A-P-E state 80S ribosomeElectron microscopy2.75742025-12-24
79P7N|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-A/T-P-Z state 80S ribosomeElectron microscopy2.83742025-12-24
89P6Z|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P-Z state 80S ribosomeElectron microscopy2.97742025-12-24
99P73|1|APTransfer RNAA/P site tRNAHomo sapiensEukaryaRF00005In situ human eEF2-A/P-P/E state 80S ribosomeElectron microscopy2.66712025-12-24
109P7X|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human A-P-Z state 80S ribosomeElectron microscopy2.83742025-12-24
119P7Y|1|AtTransfer RNAA site tRNAHomo sapiensEukaryaRF00005In situ human A-P-E state 80S ribosomeElectron microscopy2.75712025-12-24
129PA7|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human 80S consensus ribosome with EBP1Electron microscopy2.67742025-12-24
139P76|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human eEF1A-A/T-P state 80S ribosomeElectron microscopy2.83742025-12-24
149P7L|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human Post-eEF1A-AT-P state 80S ribosomeElectron microscopy2.92742025-12-24
159P7X|1|AtTransfer RNAA site tRNAHomo sapiensEukaryaRF00005In situ human A-P-Z state 80S ribosomeElectron microscopy2.83712025-12-24
169B0S|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8742025-03-19
179P7F|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated A-P state 80S ribosomeElectron microscopy3.56742025-12-24
189P7G|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated A-P-Z state 80S ribosomeElectron microscopy3.54742025-12-24
199B0Q|1|APTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
209P7W|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human A-P state 80S ribosomeElectron microscopy2.93742025-12-24
219B0Q|1|aPTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-back di-ribosome structure (Composite map)Electron microscopy3.2712025-03-19
229P7H|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosomeElectron microscopy3.68742025-12-24
239P7I|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosomeElectron microscopy3.69742025-12-24
249P7F|1|AtTransfer RNAA site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated A-P state 80S ribosomeElectron microscopy3.56712025-12-24
259P7G|1|AtTransfer RNAA site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated A-P-Z state 80S ribosomeElectron microscopy3.54712025-12-24
269B0S|1|aPTransfer RNAA/P site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ human top-top di-ribosome structure (Composite map)Electron microscopy3.8712025-03-19
279P7J|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated human P state 80S ribosomeElectron microscopy3.91742025-12-24
289P7W|1|AtTransfer RNAA site tRNAHomo sapiensEukaryaRF00005In situ human A-P state 80S ribosomeElectron microscopy2.93712025-12-24
299P8I|1|PtTransfer RNAP site tRNA [Homo sapiens]Homo sapiensEukaryaRF00005In situ HHT and CHX treated human P-Z state 80S ribosomeElectron microscopy3.89742025-12-24
309PKG|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human P state 80S ribosomeElectron microscopy3.26742025-12-24
319AZC|1|PtTransfer RNAP site tRNAHomo sapiensEukaryaRF00005In situ human 80S ribosome (Consensus map)Electron microscopy2.19742025-04-30

Release history

Release4.19
Date2025-12-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19P7F|1|PtIn situ HHT and CHX treated A-P state 80S ribosomeELECTRON MICROSCOPY3.5674
29P7G|1|PtIn situ HHT and CHX treated A-P-Z state 80S ribosomeELECTRON MICROSCOPY3.5474
39P7X|1|PtIn situ human A-P-Z state 80S ribosomeELECTRON MICROSCOPY2.8374
49P7Y|1|PtIn situ human A-P-E state 80S ribosomeELECTRON MICROSCOPY2.7574
59P7W|1|PtIn situ human A-P state 80S ribosomeELECTRON MICROSCOPY2.9374
69PA7|1|PtIn situ human 80S consensus ribosome with EBP1ELECTRON MICROSCOPY2.6774
79PBE|1|PtIn situ human 80S ribosome (composite map)ELECTRON MICROSCOPY2.1974
89B0S|1|PtIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.874
99AZC|1|PtIn situ human 80S ribosome (Consensus map)ELECTRON MICROSCOPY2.1974
109P8I|1|PtIn situ HHT and CHX treated human P-Z state 80S ribosomeELECTRON MICROSCOPY3.8974
119P7I|1|PtIn situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosomeELECTRON MICROSCOPY3.6974
129P6Z|1|PtIn situ human P-Z state 80S ribosomeELECTRON MICROSCOPY2.9774
139P7O|1|PtIn situ human AT-P-Z state ribosomeELECTRON MICROSCOPY2.6574
149P7N|1|PtIn situ human Post-eEF1A-A/T-P-Z state 80S ribosomeELECTRON MICROSCOPY2.8374
159P8B|1|PtIn situ human eEF1A-A/T-P-E state 80S ribosomeELECTRON MICROSCOPY2.4874
169P7K|1|PtIn situ human post eEF1A-A/T-P-E state 80S ribosomeELECTRON MICROSCOPY2.874
179P72|1|PtIn situ human P-E state 80S ribosomeELECTRON MICROSCOPY2.874
189P76|1|PtIn situ human eEF1A-A/T-P state 80S ribosomeELECTRON MICROSCOPY2.8374
199P7L|1|PtIn situ human Post-eEF1A-AT-P state 80S ribosomeELECTRON MICROSCOPY2.9274
209P7H|1|PtIn situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosomeELECTRON MICROSCOPY3.6874
219P7J|1|PtIn situ HHT and CHX treated human P state 80S ribosomeELECTRON MICROSCOPY3.9174
229PKG|1|PtIn situ human P state 80S ribosomeELECTRON MICROSCOPY3.2674
239P7F|1|AtIn situ HHT and CHX treated A-P state 80S ribosomeELECTRON MICROSCOPY3.5671
249P7G|1|AtIn situ HHT and CHX treated A-P-Z state 80S ribosomeELECTRON MICROSCOPY3.5471
259P7X|1|AtIn situ human A-P-Z state 80S ribosomeELECTRON MICROSCOPY2.8371
269P7Y|1|AtIn situ human A-P-E state 80S ribosomeELECTRON MICROSCOPY2.7571
279P7W|1|AtIn situ human A-P state 80S ribosomeELECTRON MICROSCOPY2.9371
289B0Q|1|APIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271
299B0Q|1|aPIn situ human top-back di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.271
309B0S|1|aPIn situ human top-top di-ribosome structure (Composite map)ELECTRON MICROSCOPY3.871
319P73|1|APIn situ human eEF2-A/P-P/E state 80S ribosomeELECTRON MICROSCOPY2.6671

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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