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Equivalence class NR_4.0_85948.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13IE1|1|H (rep)RNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
23IE1|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
31NB7|1|E5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-ray diffraction2.92003-03-25
43IE1|1|FRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04
51NB7|1|F5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-ray diffraction2.92003-03-25
62QQP|1|RRNA (5'-R(*UP*UP*UP*U)-3')Crystal Structure of Authentic Providence VirusX-ray diffraction3.82009-01-20
74DR7|1|V5'-R(*UP*UP*UP*U)-3'Thermus thermophilusCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-ray diffraction3.752012-11-14
83IE1|1|GRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-ray diffraction2.852009-08-04

Release history

Release2.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.99
Date2014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_85948.1NR_all_22177.12.1(1) 3IE1|1|H(7) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_37267.12.1(1) 3IE1|1|F(7) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_58076.12.1(1) 3IE1|1|G(7) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|H, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_63635.12.1(1) 2QQP|1|R(7) 1NB7|1|E, 1NB7|1|F, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_64659.12.1(1) 1NB7|1|F(7) 1NB7|1|E, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_65147.12.1(1) 4DR7|1|V(7) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H(0)
NR_4.0_85948.1NR_all_77874.12.1(1) 1NB7|1|E(7) 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0)
NR_4.0_85948.1NR_all_86159.12.1(1) 3IE1|1|E(7) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_85948.1NR_4.0_96683.12.100(8) 1NB7|1|E, 1NB7|1|F, 2QQP|1|R, 3IE1|1|E, 3IE1|1|F, 3IE1|1|G, 3IE1|1|H, 4DR7|1|V(0) (6) 5GMF|1|E, 5GMF|1|F, 5GMF|1|G, 5GMF|1|H, 5GMG|1|C, 5GMG|1|D

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13IE1|1|HCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
23IE1|1|ECrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
33IE1|1|FCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
44DR7|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.754
52QQP|1|RCrystal Structure of Authentic Providence VirusX-RAY DIFFRACTION3.84
63IE1|1|GCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852
71NB7|1|FHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94
81NB7|1|EHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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