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Equivalence class NR_4.0_89181.8 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19B1Y|1|U (rep)5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain WT mycobacterial ribosomeElectron microscopy2.471182025-03-26
29B24|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain gidB mutant mycobacterial ribosomeElectron microscopy2.471182025-03-26
38FR8|1|B5S ribosomal RNA5S rRNA (118-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.761182023-05-17
48VR4|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryElectron microscopy2.81182025-02-19
58WHX|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.81172024-02-28
68WHY|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.Electron microscopy2.71172024-02-28
78WI8|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.Electron microscopy2.71182024-02-28
88V9L|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy31182024-02-07
97S0S|1|i5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitElectron microscopy3.051182022-03-30
109B1X|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain gidB mutant mycobacterial ribosomeElectron microscopy3.071182025-03-26
118V9J|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.11182024-02-07
128V9K|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.11182024-02-07
138VKI|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CElectron microscopy2.961182025-02-19
145XYM|1|B5S ribosomal RNA5S RNAMycolicibacterium smegmatisBacteriaRF00001Large subunit of Mycobacterium smegmatisElectron microscopy3.081162017-09-27
158VK7|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BElectron microscopy3.091142025-02-19
165O60|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.181182017-07-12
178VK0|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AElectron microscopy3.141182025-02-19
188VIO|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.261182025-02-19
199B1W|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain WT mycobacterial ribosomeElectron microscopy3.261182025-03-26
208KAB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit-HflX complexElectron microscopy3.31182024-07-31
218VRL|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmElectron microscopy3.331182025-02-19
225O61|1|B5S ribosomal RNA5S rRNAMycobacterium smegmatisBacteriaRF00001The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.311182017-07-12
238VKW|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXElectron microscopy3.441182025-02-19
248VR8|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmElectron microscopy3.251182025-02-19
258WI7|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.51182024-02-28
267XAM|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthElectron microscopy3.51182023-05-03
278WIB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
286DZP|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitElectron microscopy3.421182018-10-03
296DZI|1|B5S ribosomal RNA5S RNA (118-MER)Mycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.461182018-09-26
308WIC|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
318XZ3|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit with ErythromycinElectron microscopy3.61182024-07-31

Release history

Release3.3823.3833.384
Date2025-04-092025-04-162025-04-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18VKW|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXELECTRON MICROSCOPY3.44118
28VK0|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AELECTRON MICROSCOPY3.14118
38VRL|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmELECTRON MICROSCOPY3.33118
48VR8|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmELECTRON MICROSCOPY3.25118
58VK7|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BELECTRON MICROSCOPY3.09114
68VR4|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryELECTRON MICROSCOPY2.8118
78VKI|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CELECTRON MICROSCOPY2.96118
87S0S|1|iM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.05118
98KAB|1|BMycobacterium smegmatis 50S ribosomal subunit-HflX complexELECTRON MICROSCOPY3.3118
108WHX|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.8117
118WHY|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.7117
128WIB|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
138WIC|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
148WI7|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.5118
158WI8|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY2.7118
168XZ3|1|BMycobacterium smegmatis 50S ribosomal subunit with ErythromycinELECTRON MICROSCOPY3.6118
177XAM|1|BMycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthELECTRON MICROSCOPY3.5118
188VIO|1|BStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.26118
198V9L|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY3118
208V9J|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.1118
218V9K|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.1118
229B1X|1|UHWS19 strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY3.07118
239B1W|1|UHWS19 strain WT mycobacterial ribosomeELECTRON MICROSCOPY3.26118
249B24|1|UWT strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY2.47118
259B1Y|1|UWT strain WT mycobacterial ribosomeELECTRON MICROSCOPY2.47118
265O60|1|BStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.18118
275O61|1|BThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.31118
286DZI|1|BCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.46118
296DZP|1|BCryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.42118
305XYM|1|BLarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.08116
318FR8|1|BStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.76118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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