Equivalence class NR_4.0_92954.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5MGA|1|B+ 5MGA|1|C+ 5MGA|1|D (rep) | DNA (26-MER), DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), RNA (40-MER) | Francisella tularensis | Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage | X-ray diffraction | 3 | 78 | 2017-06-21 | |||
| 2 | 6GTG|1|B+ 6GTG|1|C | DNA (32-MER), RNA (40-MER) | Francisella tularensis | Transition state structure of Cpf1(Cas12a) I4 conformation | Electron microscopy | 3.27 | 73 | 2018-12-19 | |||
| 3 | 9MKX|1|B+ 9MKX|1|C | NTS DNA, RNA (31-MER), TS DNA | synthetic construct | FnoCas12a bridge helix variant state 4b | Electron microscopy | 3.21 | 51 | 2026-02-11 | |||
| 4 | 9MKV|1|B+ 9MKV|1|C | crRNA, TS DNA | synthetic construct | FnoCas12a bridge helix variant state 3 | Electron microscopy | 3.68 | 45 | 2026-02-11 | |||
| 5 | 9MKW|1|B+ 9MKW|1|C | RNA (36-MER), TS DNA | synthetic construct | FnoCas12a bridge helix variant state 4a | Electron microscopy | 3.63 | 56 | 2026-02-11 | |||
| 6 | 6GTF|1|B | RNA (29-MER) | Francisella tularensis | Transient state structure of CRISPR-Cpf1 (Cas12a) I5 conformation | Electron microscopy | 3.63 | 29 | 2018-12-19 | |||
| 7 | 9MKU|1|B+ 9MKU|1|C | crRNA, TS DNA | synthetic construct | FnoCas12a bridge helix variant state 2 | Electron microscopy | 4 | 36 | 2026-02-11 | |||
| 8 | 6GTC|1|B | RNA (28-MER) | Francisella tularensis | Transition state structure of Cpf1(Cas12a) I1 conformation | Electron microscopy | 3.91 | 28 | 2018-12-19 |
Release history
| Release | 4.26 |
|---|---|
| Date | 2026-02-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6GTC|1|B | Transition state structure of Cpf1(Cas12a) I1 conformation | ELECTRON MICROSCOPY | 3.91 | 28 | |
| 2 | 9MKW|1|B+ 9MKW|1|C | FnoCas12a bridge helix variant state 4a | ELECTRON MICROSCOPY | 3.63 | 56 | |
| 3 | 9MKV|1|B+ 9MKV|1|C | FnoCas12a bridge helix variant state 3 | ELECTRON MICROSCOPY | 3.68 | 45 | |
| 4 | 9MKU|1|B+ 9MKU|1|C | FnoCas12a bridge helix variant state 2 | ELECTRON MICROSCOPY | 4 | 36 | |
| 5 | 9MKX|1|B+ 9MKX|1|C | FnoCas12a bridge helix variant state 4b | ELECTRON MICROSCOPY | 3.21 | 51 | |
| 6 | 6GTF|1|B | Transient state structure of CRISPR-Cpf1 (Cas12a) I5 conformation | ELECTRON MICROSCOPY | 3.63 | 29 | |
| 7 | 6GTG|1|B+ 6GTG|1|C | Transition state structure of Cpf1(Cas12a) I4 conformation | ELECTRON MICROSCOPY | 3.27 | 73 | |
| 8 | 5MGA|1|B+ 5MGA|1|C+ 5MGA|1|D | Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage | X-RAY DIFFRACTION | 3 | 78 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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