RNA 3D Hub //

Equivalence class NR_4.0_94066.13 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19FY2|1|a (rep)16S rRNABacillus subtilis subsp. subtilis str. 168Structure of CliM-stalled Bacillus subtilis 70S ribosome with empty A-siteElectron microscopy2.315092026-01-14
29FY1|1|a16S rRNABacillus subtilis subsp. subtilis str. 168Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-siteElectron microscopy2.315092026-01-14
39FY3|1|a16S rRNABacillus subtilis subsp. subtilis str. 168Structure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-siteElectron microscopy2.815332026-01-14
46HA1|1|aSmall subunit ribosomal RNA16S ribosomal RNABacillus subtilisBacteriaRF00177Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.115332018-08-29
58BUU|1|aSmall subunit ribosomal RNA16S rRNA, mRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177ARE-ABCF VmlR2 bound to a 70S ribosomeElectron microscopy2.915382023-04-05
68CDU|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (main state)Electron microscopy3.113332023-12-20
78QPP|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilisBacteriaRF00177Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.415332023-12-27
87O5B|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00177Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.3315332022-02-02
97QV2|1|aSmall subunit ribosomal RNA16S ribosomal RNA, mRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Bacillus subtilis collided disome (Collided 70S)Electron microscopy3.515452022-03-09
107QV1|1|aSmall subunit ribosomal RNA16S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Bacillus subtilis collided disome (Leading 70S)Electron microscopy3.515332022-03-09
118R55|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilisBacteriaRF00177Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.5715332024-01-17
125NJT|1|ASmall subunit ribosomal RNA16S ribosomal RNABacillus subtilisBacteriaRF00177Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.815442017-06-14
138CEC|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (State I - head-turning)Electron microscopy3.5713332023-12-20
146HA8|1|aSmall subunit ribosomal RNA16S rRNABacillus subtilisBacteriaRF00177Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.515332018-08-29
153J9W|1|AASmall subunit ribosomal RNA16S ribosomal RNA, mRNABacillus subtilisBacteriaRF00177Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.915442015-04-29
168CEE|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (State I - head-turning)Electron microscopy3.713332023-12-20
178QCQ|1|aSmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177B. subtilis ApdA-stalled ribosomal complexElectron microscopy2.315332024-03-20

Release history

Release4.22
Date2026-01-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18QCQ|1|aB. subtilis ApdA-stalled ribosomal complexELECTRON MICROSCOPY2.31533
29FY3|1|aStructure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-siteELECTRON MICROSCOPY2.81533
38BUU|1|aARE-ABCF VmlR2 bound to a 70S ribosomeELECTRON MICROSCOPY2.91538
48R55|1|ABacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.571533
58QPP|1|ABacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.41533
67O5B|1|ACryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.331533
77QV1|1|aBacillus subtilis collided disome (Leading 70S)ELECTRON MICROSCOPY3.51533
87QV2|1|aBacillus subtilis collided disome (Collided 70S)ELECTRON MICROSCOPY3.51545
96HA8|1|aCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.51533
106HA1|1|aCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.11533
119FY2|1|aStructure of CliM-stalled Bacillus subtilis 70S ribosome with empty A-siteELECTRON MICROSCOPY2.31509
129FY1|1|aStructure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-siteELECTRON MICROSCOPY2.31509
133J9W|1|AACryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.91544
145NJT|1|AStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.81544
158CEC|1|ARnase R bound to a 30S degradation intermediate (State I - head-turning)ELECTRON MICROSCOPY3.571333
168CDU|1|ARnase R bound to a 30S degradation intermediate (main state)ELECTRON MICROSCOPY3.11333
178CEE|1|ARnase R bound to a 30S degradation intermediate (State I - head-turning)ELECTRON MICROSCOPY3.71333

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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