Equivalence class NR_4.0_94066.7 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8BUU|1|a (rep) | Small subunit ribosomal RNA | 16S rRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | ARE-ABCF VmlR2 bound to a 70S ribosome | Electron microscopy | 2.9 | 1538 | 2023-04-05 |
| 2 | 6HA1|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Bacillus subtilis | Bacteria | RF00177 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 1533 | 2018-08-29 |
| 3 | 7O5B|1|A | Small subunit ribosomal RNA | 16S rRNA (1533-MER) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | Electron microscopy | 3.33 | 1533 | 2022-02-02 |
| 4 | 7QV2|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 1545 | 2022-03-09 |
| 5 | 6HA8|1|a | Small subunit ribosomal RNA | 16S rRNA | Bacillus subtilis | Bacteria | RF00177 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | Electron microscopy | 3.5 | 1533 | 2018-08-29 |
| 6 | 7QV1|1|a | Small subunit ribosomal RNA | 16S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Bacillus subtilis collided disome (Leading 70S) | Electron microscopy | 3.5 | 1533 | 2022-03-09 |
| 7 | 8CDU|1|A | Small subunit ribosomal RNA | 16S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Rnase R bound to a 30S degradation intermediate (main state) | Electron microscopy | 3.1 | 1333 | 2023-12-20 |
| 8 | 5NJT|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA | Bacillus subtilis | Bacteria | RF00177 | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | Electron microscopy | 3.8 | 1544 | 2017-06-14 |
| 9 | 3J9W|1|AA | Small subunit ribosomal RNA | 16S ribosomal RNA, mRNA | Bacillus subtilis | Bacteria | RF00177 | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | Electron microscopy | 3.9 | 1544 | 2015-04-29 |
| 10 | 8CEC|1|A | Small subunit ribosomal RNA | 16S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Rnase R bound to a 30S degradation intermediate (State I - head-turning) | Electron microscopy | 3.57 | 1333 | 2023-12-20 |
| 11 | 8CEE|1|A | Small subunit ribosomal RNA | 16S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00177 | Rnase R bound to a 30S degradation intermediate (State I - head-turning) | Electron microscopy | 3.7 | 1333 | 2023-12-20 |
Release history
| Release | 3.314 |
|---|---|
| Date | 2023-12-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8BUU|1|a | ARE-ABCF VmlR2 bound to a 70S ribosome | ELECTRON MICROSCOPY | 2.9 | 1538 | |
| 2 | 3J9W|1|AA | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 1544 | |
| 3 | 5NJT|1|A | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 1544 | |
| 4 | 6HA8|1|a | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 1533 | |
| 5 | 6HA1|1|a | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 1533 | |
| 6 | 7QV1|1|a | Bacillus subtilis collided disome (Leading 70S) | ELECTRON MICROSCOPY | 3.5 | 1533 | |
| 7 | 7QV2|1|a | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 1545 | |
| 8 | 7O5B|1|A | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | ELECTRON MICROSCOPY | 3.33 | 1533 | |
| 9 | 8CEC|1|A | Rnase R bound to a 30S degradation intermediate (State I - head-turning) | ELECTRON MICROSCOPY | 3.57 | 1333 | |
| 10 | 8CDU|1|A | Rnase R bound to a 30S degradation intermediate (main state) | ELECTRON MICROSCOPY | 3.1 | 1333 | |
| 11 | 8CEE|1|A | Rnase R bound to a 30S degradation intermediate (State I - head-turning) | ELECTRON MICROSCOPY | 3.7 | 1333 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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