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Equivalence class NR_4.0_94871.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16MDZ|1|E+ 6MDZ|1|C (rep)RNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')unidentifiedHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-ray diffraction3.4432019-08-07
26MDZ|1|F+ 6MDZ|1|DRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')unidentifiedHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-ray diffraction3.4312019-08-07
36NIT|1|E+ 6NIT|1|CRNA (5'-R(P*AP*AP*CP*AP*CP*CP*AP*UP*CP*CP*AP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')synthetic constructHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-ray diffraction3.8392019-08-07
46MFR|1|E+ 6MFR|1|CRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')unidentifiedHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-ray diffraction3.6422019-08-07
56MFR|1|F+ 6MFR|1|DRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')unidentifiedHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-ray diffraction3.6302019-08-07
66NIT|1|F+ 6NIT|1|DRNA (5'-R(P*AP*AP*CP*AP*CP*CP*AP*UP*CP*CP*AP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')synthetic constructHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-ray diffraction3.8332019-08-07

Release history

Release3.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16MDZ|1|E+ 6MDZ|1|CHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.443
26MFR|1|E+ 6MFR|1|CHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.642
36NIT|1|E+ 6NIT|1|CHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.839
46NIT|1|F+ 6NIT|1|DHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.833
56MDZ|1|F+ 6MDZ|1|DHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.431
66MFR|1|F+ 6MFR|1|DHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.630

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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