RNA 3D Hub //

Equivalence class NR_4.0_97426.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18SA2|1|B+ 8SA2|1|A (rep)Cobalamin riboswitch + Cobalamin riboswitchadenosylcobalamin riboswitch form 1Caldanaerobacter subterraneus subsp. tengcongensisBacteriaRF00174 + RF00174Adenosylcobalamin-bound riboswitch dimer, form 1Electron microscopy3.14202023-07-26
28SA5|1|A+ 8SA5|1|BCobalamin riboswitch + Cobalamin riboswitchadenosylcobalamin riboswitch form 4Caldanaerobacter subterraneus subsp. tengcongensisBacteriaRF00174 + RF00174Adenosylcobalamin-bound riboswitch dimer, form 4Electron microscopy3.53452023-07-26
38SA4|1|A+ 8SA4|1|BCobalamin riboswitch + Cobalamin riboswitchadenosylcobalamin riboswitch form 3Caldanaerobacter subterraneus subsp. tengcongensisBacteriaRF00174 + RF00174Adenosylcobalamin-bound riboswitch dimer, form 3Electron microscopy3.12362023-07-26
48SA3|1|ACobalamin riboswitchadenosylcobalamin riboswitch form 2Caldanaerobacter subterraneus subsp. tengcongensisBacteriaRF00174Adenosylcobalamin-bound riboswitch dimer, form 2Electron microscopy32102023-07-26
58SA3|1|BCobalamin riboswitchadenosylcobalamin riboswitch form 2Caldanaerobacter subterraneus subsp. tengcongensisBacteriaRF00174Adenosylcobalamin-bound riboswitch dimer, form 2Electron microscopy32102023-07-26

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18SA2|1|B+ 8SA2|1|AAdenosylcobalamin-bound riboswitch dimer, form 1ELECTRON MICROSCOPY3.1420
28SA4|1|A+ 8SA4|1|BAdenosylcobalamin-bound riboswitch dimer, form 3ELECTRON MICROSCOPY3.1236
38SA5|1|A+ 8SA5|1|BAdenosylcobalamin-bound riboswitch dimer, form 4ELECTRON MICROSCOPY3.5345
48SA3|1|BAdenosylcobalamin-bound riboswitch dimer, form 2ELECTRON MICROSCOPY3210
58SA3|1|AAdenosylcobalamin-bound riboswitch dimer, form 2ELECTRON MICROSCOPY3210

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8SA2|1|B+8SA2|1|A:8SA2|1|B+8SA2|1|A = 08SA2|1|B+8SA2|1|A:8SA4|1|A+8SA4|1|B = 0.16308SA2|1|B+8SA2|1|A:8SA5|1|A+8SA5|1|B = 0.13648SA2|1|B+8SA2|1|A:8SA3|1|B = 0.15808SA2|1|B+8SA2|1|A:8SA3|1|A = 0.18318SA4|1|A+8SA4|1|B:8SA2|1|B+8SA2|1|A = 0.16308SA4|1|A+8SA4|1|B:8SA4|1|A+8SA4|1|B = 08SA4|1|A+8SA4|1|B:8SA5|1|A+8SA5|1|B = 0.13908SA4|1|A+8SA4|1|B:8SA3|1|B = 0.14898SA4|1|A+8SA4|1|B:8SA3|1|A = 0.14988SA5|1|A+8SA5|1|B:8SA2|1|B+8SA2|1|A = 0.13648SA5|1|A+8SA5|1|B:8SA4|1|A+8SA4|1|B = 0.13908SA5|1|A+8SA5|1|B:8SA5|1|A+8SA5|1|B = 08SA5|1|A+8SA5|1|B:8SA3|1|B = 0.13088SA5|1|A+8SA5|1|B:8SA3|1|A = 0.16238SA3|1|B:8SA2|1|B+8SA2|1|A = 0.15808SA3|1|B:8SA4|1|A+8SA4|1|B = 0.14898SA3|1|B:8SA5|1|A+8SA5|1|B = 0.13088SA3|1|B:8SA3|1|B = 08SA3|1|B:8SA3|1|A = 0.13708SA3|1|A:8SA2|1|B+8SA2|1|A = 0.18318SA3|1|A:8SA4|1|A+8SA4|1|B = 0.14988SA3|1|A:8SA5|1|A+8SA5|1|B = 0.16238SA3|1|A:8SA3|1|B = 0.13708SA3|1|A:8SA3|1|A = 08SA2|1|B+8SA2|1|A8SA4|1|A+8SA4|1|B8SA5|1|A+8SA5|1|B8SA3|1|B8SA3|1|ADiscrepancy0.000.050.100.15

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0207 s