RNA 3D Hub //

Equivalence class NR_4.0_97539.9 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19J1M|1|a (rep)Small subunit ribosomal RNA16S rRNAMycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2BacteriaRF00177KU13-bond Mycobacterium tuberculosis 70S ribosomeElectron microscopy2.3315192025-03-19
28FR8|1|aSmall subunit ribosomal RNA16S rRNA (1511-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.7615112023-05-17
38WHX|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.815152024-02-28
48WIF|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.Electron microscopy2.915172024-02-28
58V9L|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy315112024-02-07
68V9J|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.115112024-02-07
78V9K|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.115112024-02-07
88VIO|1|aSmall subunit ribosomal RNA16S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.2615112025-02-19
95O61|1|BASmall subunit ribosomal RNA16S rRNAMycobacterium smegmatisBacteriaRF00177The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.3115112017-07-12
105ZEB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. Smegmatis P/P state 70S ribosome structureElectron microscopy3.415062018-09-26
115ZEP|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis hibernating state 70S ribosome structureElectron microscopy3.415062018-09-26
126DZI|1|hSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.4615112018-09-26
138WIB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
148WID|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.515152024-02-28
158WI7|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
168WI9|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.Electron microscopy3.515152024-02-28
175O5J|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Structure of the 30S small ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.4515112017-07-12
185ZEU|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis P/P state 30S ribosomal subunitElectron microscopy3.715062018-09-26
196DZK|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPYElectron microscopy3.615112018-09-19
205XYU|1|ASmall subunit ribosomal RNA16S RNAMycolicibacterium smegmatisBacteriaRF00177Small subunit of Mycobacterium smegmatis ribosomeElectron microscopy3.4513792017-09-27

Release history

Release3.379
Date2025-03-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19J1M|1|aKU13-bond Mycobacterium tuberculosis 70S ribosomeELECTRON MICROSCOPY2.331519
25XYU|1|ASmall subunit of Mycobacterium smegmatis ribosomeELECTRON MICROSCOPY3.451379
35O61|1|BAThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.311511
45O5J|1|AStructure of the 30S small ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.451511
55ZEP|1|aM. smegmatis hibernating state 70S ribosome structureELECTRON MICROSCOPY3.41506
65ZEU|1|aM. smegmatis P/P state 30S ribosomal subunitELECTRON MICROSCOPY3.71506
75ZEB|1|aM. Smegmatis P/P state 70S ribosome structureELECTRON MICROSCOPY3.41506
88FR8|1|aStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.761511
98WHX|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.81515
108WIF|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.91517
118WID|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
128WIB|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
138WI9|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
148WI7|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
156DZI|1|hCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.461511
166DZK|1|ACryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPYELECTRON MICROSCOPY3.61511
178V9K|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.11511
188V9L|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY31511
198V9J|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.11511
208VIO|1|aStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.261511

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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