#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.4322019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.4322019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-ray diffraction1.522019-06-12
47MPL|1|D5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
57MPL|1|H5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
67MPL|1|B5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
77MPL|1|J5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
87MPL|1|F5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
97MPL|1|N5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
107MPL|1|L5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
117MPL|1|P5'-phosphorylated GGsynthetic constructBartonella henselae NrnC bound to pGGX-ray diffraction1.822021-09-15
126IJ2|1|FRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.722019-10-09
136IJ2|1|GRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.722019-10-09
146IJ2|1|HRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.722019-10-09
156IJ2|1|ERNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.722019-10-09
163U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.3222011-10-12
173U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.3222011-10-12
187EH1|1|IRNA (5'-R(*GP*G)-3')synthetic constructThermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-ray diffraction2.922021-07-14
197MPQ|1|R5'-phosphorylated GGsynthetic constructBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-ray diffraction2.3522021-09-15
205UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.122017-07-05
215UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.122017-07-05
227EH2|1|RRNA (5'-R(*GP*G)-3')synthetic constructThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-ray diffraction3.3422021-07-14
237EH2|1|IRNA (5'-R(*GP*G)-3')synthetic constructThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-ray diffraction3.3422021-07-14
244X4U|1|HRNA (5'-D(*GP*G)-3')Homo sapiensCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-ray diffraction2.722015-02-11
254AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.0122013-01-09
266OY5|1|IRNA (5'-D(*(GTP))-R(P*G)-3')Thermus thermophilusX-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 minX-ray diffraction3.122019-06-05
276OWL|1|BRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction212020-02-26
286OWL|1|CRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction212020-02-26
294AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.0122013-01-09
304LQ3|1|R5'-R(P*GP*G)-3'Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-ray diffraction2.622014-02-12
316S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-ray diffraction212019-08-28
327MPU|1|D5'-phosphorylated GGsynthetic constructBrucella melitensis NrnC bound to pGGX-ray diffraction1.7222021-09-15
337MQB|1|BRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
347MQB|1|DRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
357MQB|1|FRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
367MQB|1|HRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
377MQB|1|JRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
387MQB|1|LRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
397MQB|1|NRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
407MQB|1|PRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. D4 SymmetryElectron microscopy3.2522021-09-15
417MQC|1|BRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
427MQC|1|DRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
437MQC|1|FRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
447MQC|1|HRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
457MQC|1|JRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
467MQC|1|LRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
477MQC|1|NRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
487MQC|1|PRNA (5'-R(P*GP*G)-3')synthetic constructBartonella henselae NrnC bound to pGG. C1 reconstruction.Electron microscopy3.6422021-09-15
496YMW|1|CRNA (pppGpG)synthetic constructCryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complexElectron microscopy3.7122020-12-09

Release history

Release3.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.246
Date2021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-31

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16IJ2|1|ECrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
26IJ2|1|HCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
35UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
46OY5|1|IX-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 minX-RAY DIFFRACTION3.12
57EH2|1|IThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342
65UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
77EH2|1|RThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342
87MQC|1|NBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
97MQC|1|PBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
107MQB|1|NBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
117MPQ|1|RBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-RAY DIFFRACTION2.352
127EH1|1|IThermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-RAY DIFFRACTION2.92
134LQ3|1|RCrystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-RAY DIFFRACTION2.62
144X4U|1|HCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-RAY DIFFRACTION2.72
154AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
164AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
173U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
183U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
197MQB|1|PBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
207MQB|1|DBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
217MQB|1|LBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
227MPU|1|DBrucella melitensis NrnC bound to pGGX-RAY DIFFRACTION1.722
236S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
247MQB|1|BBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
257MQC|1|HBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
266YMW|1|CCryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complexELECTRON MICROSCOPY3.712
277MQC|1|LBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
286OWL|1|CRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
297MQB|1|FBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
307MQC|1|DBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
317MQC|1|FBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
327MQC|1|JBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
337MQB|1|JBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
347MQB|1|HBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
357MQC|1|BBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
366OWL|1|BRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
376IJ2|1|FCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
387MPL|1|JBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
397MPL|1|BBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
407MPL|1|HBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
417MPL|1|PBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
426IJ2|1|GCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
437MPL|1|LBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
447MPL|1|FBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
457MPL|1|DBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
467MPL|1|NBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
476N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52
486N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
496N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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