Equivalence class NR_4.0_98800.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6K4Q|1|A+ 6K4Q|1|C+ 6K4Q|1|D (rep) | Trans-activating crRNA | DNA (28-MER), DNA (5'-D(*AP*AP*AP*CP*GP*GP*TP*AP*TP*TP*G)-3'), sgRNA | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM) | X-ray diffraction | 2.7 | 120 | 2019-09-25 |
| 2 | 6AEG|1|A+ 6AEG|1|C+ 6AEG|1|D | Trans-activating crRNA | DNA (25-MER), DNA (5'-D(*AP*AP*AP*GP*AP*TP*TP*AP*TP*TP*G)-3'), RNA (95-MER) | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM) | X-ray diffraction | 2.7 | 131 | 2019-03-27 |
| 3 | 6K4P|1|A+ 6K4P|1|C+ 6K4P|1|D | Trans-activating crRNA | DNA (28-MER), non-targeted DNA, sgRNA | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM) | X-ray diffraction | 2.9 | 121 | 2019-09-25 |
| 4 | 6K57|1|A+ 6K57|1|C+ 6K57|1|D | Trans-activating crRNA | non-target DNA, sgRNA, target DNA | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM) | X-ray diffraction | 2.98 | 120 | 2019-09-25 |
| 5 | 6AEB|1|E+ 6AEB|1|G+ 6AEB|1|H | Trans-activating crRNA | DNA (25-MER), DNA (5'-D(*AP*AP*AP*AP*AP*GP*TP*AP*TP*TP*G)-3'), RNA (95-MER) | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-ray diffraction | 3 | 131 | 2019-03-27 |
| 6 | 6AEB|1|A+ 6AEB|1|C+ 6AEB|1|D | Trans-activating crRNA | DNA (25-MER), DNA (5'-D(*AP*AP*AP*AP*AP*GP*TP*AP*TP*TP*G)-3'), RNA (95-MER) | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-ray diffraction | 3 | 131 | 2019-03-27 |
| 7 | 6K4S|1|A+ 6K4S|1|C+ 6K4S|1|D | Trans-activating crRNA | non-targeted DNA, sgRNA, targeted DNA | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and DNA (TGC PAM) | X-ray diffraction | 3.01 | 118 | 2019-09-25 |
| 8 | 6K4U|1|A+ 6K4U|1|C+ 6K4U|1|D | Trans-activating crRNA | non-target DNA, sgRNA, target DNA | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM) | X-ray diffraction | 3.2 | 118 | 2019-09-25 |
| 9 | 6K3Z|1|A+ 6K3Z|1|C+ 6K3Z|1|D | Trans-activating crRNA | DNA (28-MER), DNA (5'-D(*AP*AP*AP*TP*GP*AP*TP*AP*TP*TP*G)-3'), RNA (81-MER) | Streptococcus pyogenes | Bacteria | RF02348 | Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM) | X-ray diffraction | 3.2 | 120 | 2019-09-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6AEB|1|E+ 6AEB|1|G+ 6AEB|1|H | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-RAY DIFFRACTION | 3 | 131 | |
| 2 | 6AEB|1|A+ 6AEB|1|C+ 6AEB|1|D | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-RAY DIFFRACTION | 3 | 131 | |
| 3 | 6AEG|1|A+ 6AEG|1|C+ 6AEG|1|D | Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM) | X-RAY DIFFRACTION | 2.7 | 131 | |
| 4 | 6K4P|1|A+ 6K4P|1|C+ 6K4P|1|D | Crystal structure of xCas9 in complex with sgRNA and DNA (TGG PAM) | X-RAY DIFFRACTION | 2.9 | 121 | |
| 5 | 6K4Q|1|A+ 6K4Q|1|C+ 6K4Q|1|D | Crystal structure of xCas9 in complex with sgRNA and DNA (CGG PAM) | X-RAY DIFFRACTION | 2.7 | 120 | |
| 6 | 6K57|1|A+ 6K57|1|C+ 6K57|1|D | Crystal structure of dCas9 in complex with sgRNA and DNA (CGA PAM) | X-RAY DIFFRACTION | 2.98 | 120 | |
| 7 | 6K3Z|1|A+ 6K3Z|1|C+ 6K3Z|1|D | Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM) | X-RAY DIFFRACTION | 3.2 | 120 | |
| 8 | 6K4S|1|A+ 6K4S|1|C+ 6K4S|1|D | Crystal structure of xCas9 in complex with sgRNA and DNA (TGC PAM) | X-RAY DIFFRACTION | 3.01 | 118 | |
| 9 | 6K4U|1|A+ 6K4U|1|C+ 6K4U|1|D | Crystal structure of xCas9 in complex with sgRNA and DNA (TGA PAM) | X-RAY DIFFRACTION | 3.2 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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