Equivalence class NR_all_00138.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7PWG|1|1+ 7PWG|1|4 (rep) | Large subunit ribosomal RNA | P-site tRNA, rRNA 28S, rRNA 5.8S | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 2 | 7PWO|1|1+ 7PWO|1|42 | Large subunit ribosomal RNA | P-site tRNA, rRNA 28S, rRNA 5.8S | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 3 | 8BTR|1|Lt+ 8BTR|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 4 | 8BRM|1|Lt+ 8BRM|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia ribosome in POST-T state, no E-site tRNA (A6) | Electron microscopy | 3.33 | 2023-03-15 |
| 5 | 8BR8|1|Lt+ 8BR8|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia ribosome in POST-T state (A1) | Electron microscopy | 3.35 | 2023-03-15 |
| 6 | 8BSI|1|Lt+ 8BSI|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia intestinalis | Eukarya | RF02543 | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | Electron microscopy | 3.4 | 2023-03-15 |
| 7 | 8BTD|1|Lt+ 8BTD|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Giardia Ribosome in PRE-T Hybrid State (D1) | Electron microscopy | 4.9 | 2023-03-22 |
| 8 | 8BSJ|1|Lt+ 8BSJ|1|LD | Large subunit ribosomal RNA | 5.8S rRNA, Large Subunit rRNA | Giardia intestinalis | Eukarya | RF02543 | Giardia Ribosome in PRE-T Classical State (C) | Electron microscopy | 6.49 | 2023-03-22 |
Release history
| Release | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_00138.1 | NR_all_87196.1 | 3.275 | (5) 7PWG|1|1+7PWG|1|4, 7PWO|1|1+7PWO|1|42, 8BR8|1|Lt+8BR8|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BSI|1|Lt+8BSI|1|LD | (3) 8BSJ|1|Lt+8BSJ|1|LD, 8BTD|1|Lt+8BTD|1|LD, 8BTR|1|Lt+8BTR|1|LD | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8BTD|1|Lt+ 8BTD|1|LD | Giardia Ribosome in PRE-T Hybrid State (D1) | ELECTRON MICROSCOPY | 4.9 | 2593 | |
| 2 | 8BTR|1|Lt+ 8BTR|1|LD | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 2593 | |
| 3 | 8BSI|1|Lt+ 8BSI|1|LD | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | ELECTRON MICROSCOPY | 3.4 | 2593 | |
| 4 | 8BR8|1|Lt+ 8BR8|1|LD | Giardia ribosome in POST-T state (A1) | ELECTRON MICROSCOPY | 3.35 | 2593 | |
| 5 | 8BSJ|1|Lt+ 8BSJ|1|LD | Giardia Ribosome in PRE-T Classical State (C) | ELECTRON MICROSCOPY | 6.49 | 2593 | |
| 6 | 7PWG|1|1+ 7PWG|1|4 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | ELECTRON MICROSCOPY | 2.75 | 2426 | |
| 7 | 7PWO|1|1+ 7PWO|1|42 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | ELECTRON MICROSCOPY | 2.75 | 2424 | |
| 8 | 8BRM|1|Lt+ 8BRM|1|LD | Giardia ribosome in POST-T state, no E-site tRNA (A6) | ELECTRON MICROSCOPY | 3.33 | 2594 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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