RNA 3D Hub //

Equivalence class NR_all_00138.3 Current

Showing 1 to 9 of 9 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18FRU|1|1+ 8FRU|1|4 (rep)Large subunit ribosomal RNA28S rRNA, 5.8S rRNAGiardia intestinalis assemblage AEukaryaRF0254360S subunit of the Giardia lamblia 80S ribosomeElectron microscopy2.4926922024-01-31
27PWG|1|1+ 7PWG|1|4Large subunit ribosomal RNAP-site tRNA, rRNA 28S, rRNA 5.8SGiardia lamblia ATCC 50803EukaryaRF02543Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolutionElectron microscopy2.7525882022-04-20
37PWO|1|1+ 7PWO|1|42Large subunit ribosomal RNAP-site tRNA, rRNA 28S, rRNA 5.8SGiardia lamblia ATCC 50803EukaryaRF02543Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionElectron microscopy2.7525862022-04-20
48BTR|1|Lt+ 8BTR|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia lamblia ATCC 50803EukaryaRF02543Giardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.2527352023-03-22
58BRM|1|Lt+ 8BRM|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia lamblia ATCC 50803EukaryaRF02543Giardia ribosome in POST-T state, no E-site tRNA (A6)Electron microscopy3.3327362023-03-15
68BR8|1|Lt+ 8BR8|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia lamblia ATCC 50803EukaryaRF02543Giardia ribosome in POST-T state (A1)Electron microscopy3.3527352023-03-15
78BSI|1|Lt+ 8BSI|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia intestinalisEukaryaRF02543Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)Electron microscopy3.427302023-03-15
88BTD|1|Lt+ 8BTD|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia lamblia ATCC 50803EukaryaRF02543Giardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.927352023-03-22
98BSJ|1|Lt+ 8BSJ|1|LDLarge subunit ribosomal RNA5.8S rRNA, Large Subunit rRNAGiardia intestinalisEukaryaRF02543Giardia Ribosome in PRE-T Classical State (C)Electron microscopy6.4927332023-03-22

Release history

Release3.3783.3793.3803.3813.382
Date2025-03-132025-03-192025-03-262025-04-022025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 9 of 9 entries
#SViewPDBTitleMethodResolution#NTs
18BTD|1|Lt+ 8BTD|1|LDGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.92735
28BTR|1|Lt+ 8BTR|1|LDGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.252735
38BSI|1|Lt+ 8BSI|1|LDGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)ELECTRON MICROSCOPY3.42730
48BR8|1|Lt+ 8BR8|1|LDGiardia ribosome in POST-T state (A1)ELECTRON MICROSCOPY3.352735
58BSJ|1|Lt+ 8BSJ|1|LDGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.492733
67PWG|1|1+ 7PWG|1|4Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolutionELECTRON MICROSCOPY2.752588
77PWO|1|1+ 7PWO|1|42Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionELECTRON MICROSCOPY2.752586
88FRU|1|1+ 8FRU|1|460S subunit of the Giardia lamblia 80S ribosomeELECTRON MICROSCOPY2.492692
98BRM|1|Lt+ 8BRM|1|LDGiardia ribosome in POST-T state, no E-site tRNA (A6)ELECTRON MICROSCOPY3.332736

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8BTD|1|Lt+8BTD|1|LD:8BTD|1|Lt+8BTD|1|LD = 08BTD|1|Lt+8BTD|1|LD:8BTR|1|Lt+8BTR|1|LD = 0.01758BTD|1|Lt+8BTD|1|LD:8BSI|1|Lt+8BSI|1|LD = 0.02298BTD|1|Lt+8BTD|1|LD:8BR8|1|Lt+8BR8|1|LD = 0.02448BTD|1|Lt+8BTD|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 0.02758BTD|1|Lt+8BTD|1|LD:7PWG|1|1+7PWG|1|4 = 0.04918BTD|1|Lt+8BTD|1|LD:7PWO|1|1+7PWO|1|42 = 0.04958BTD|1|Lt+8BTD|1|LD:8FRU|1|1+8FRU|1|4 = 0.04698BTD|1|Lt+8BTD|1|LD:8BRM|1|Lt+8BRM|1|LD = 0.10458BTR|1|Lt+8BTR|1|LD:8BTD|1|Lt+8BTD|1|LD = 0.01758BTR|1|Lt+8BTR|1|LD:8BTR|1|Lt+8BTR|1|LD = 08BTR|1|Lt+8BTR|1|LD:8BSI|1|Lt+8BSI|1|LD = 0.01978BTR|1|Lt+8BTR|1|LD:8BR8|1|Lt+8BR8|1|LD = 0.02198BTR|1|Lt+8BTR|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 0.02498BTR|1|Lt+8BTR|1|LD:7PWG|1|1+7PWG|1|4 = 0.04908BTR|1|Lt+8BTR|1|LD:7PWO|1|1+7PWO|1|42 = 0.04948BTR|1|Lt+8BTR|1|LD:8FRU|1|1+8FRU|1|4 = 0.04708BTR|1|Lt+8BTR|1|LD:8BRM|1|Lt+8BRM|1|LD = 0.10228BSI|1|Lt+8BSI|1|LD:8BTD|1|Lt+8BTD|1|LD = 0.02298BSI|1|Lt+8BSI|1|LD:8BTR|1|Lt+8BTR|1|LD = 0.01978BSI|1|Lt+8BSI|1|LD:8BSI|1|Lt+8BSI|1|LD = 08BSI|1|Lt+8BSI|1|LD:8BR8|1|Lt+8BR8|1|LD = 0.01458BSI|1|Lt+8BSI|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 0.01948BSI|1|Lt+8BSI|1|LD:7PWG|1|1+7PWG|1|4 = 0.04678BSI|1|Lt+8BSI|1|LD:7PWO|1|1+7PWO|1|42 = 0.04708BSI|1|Lt+8BSI|1|LD:8FRU|1|1+8FRU|1|4 = 0.04408BSI|1|Lt+8BSI|1|LD:8BRM|1|Lt+8BRM|1|LD = 0.09598BR8|1|Lt+8BR8|1|LD:8BTD|1|Lt+8BTD|1|LD = 0.02448BR8|1|Lt+8BR8|1|LD:8BTR|1|Lt+8BTR|1|LD = 0.02198BR8|1|Lt+8BR8|1|LD:8BSI|1|Lt+8BSI|1|LD = 0.01458BR8|1|Lt+8BR8|1|LD:8BR8|1|Lt+8BR8|1|LD = 08BR8|1|Lt+8BR8|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 0.01938BR8|1|Lt+8BR8|1|LD:7PWG|1|1+7PWG|1|4 = 0.04658BR8|1|Lt+8BR8|1|LD:7PWO|1|1+7PWO|1|42 = 0.04708BR8|1|Lt+8BR8|1|LD:8FRU|1|1+8FRU|1|4 = 0.04348BR8|1|Lt+8BR8|1|LD:8BRM|1|Lt+8BRM|1|LD = 0.09478BSJ|1|Lt+8BSJ|1|LD:8BTD|1|Lt+8BTD|1|LD = 0.02758BSJ|1|Lt+8BSJ|1|LD:8BTR|1|Lt+8BTR|1|LD = 0.02498BSJ|1|Lt+8BSJ|1|LD:8BSI|1|Lt+8BSI|1|LD = 0.01948BSJ|1|Lt+8BSJ|1|LD:8BR8|1|Lt+8BR8|1|LD = 0.01938BSJ|1|Lt+8BSJ|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 08BSJ|1|Lt+8BSJ|1|LD:7PWG|1|1+7PWG|1|4 = 0.04728BSJ|1|Lt+8BSJ|1|LD:7PWO|1|1+7PWO|1|42 = 0.04768BSJ|1|Lt+8BSJ|1|LD:8FRU|1|1+8FRU|1|4 = 0.04448BSJ|1|Lt+8BSJ|1|LD:8BRM|1|Lt+8BRM|1|LD = 0.09127PWG|1|1+7PWG|1|4:8BTD|1|Lt+8BTD|1|LD = 0.04917PWG|1|1+7PWG|1|4:8BTR|1|Lt+8BTR|1|LD = 0.04907PWG|1|1+7PWG|1|4:8BSI|1|Lt+8BSI|1|LD = 0.04677PWG|1|1+7PWG|1|4:8BR8|1|Lt+8BR8|1|LD = 0.04657PWG|1|1+7PWG|1|4:8BSJ|1|Lt+8BSJ|1|LD = 0.04727PWG|1|1+7PWG|1|4:7PWG|1|1+7PWG|1|4 = 07PWG|1|1+7PWG|1|4:7PWO|1|1+7PWO|1|42 = 0.00697PWG|1|1+7PWG|1|4:8FRU|1|1+8FRU|1|4 = 0.03357PWG|1|1+7PWG|1|4:8BRM|1|Lt+8BRM|1|LD = 0.04677PWO|1|1+7PWO|1|42:8BTD|1|Lt+8BTD|1|LD = 0.04957PWO|1|1+7PWO|1|42:8BTR|1|Lt+8BTR|1|LD = 0.04947PWO|1|1+7PWO|1|42:8BSI|1|Lt+8BSI|1|LD = 0.04707PWO|1|1+7PWO|1|42:8BR8|1|Lt+8BR8|1|LD = 0.04707PWO|1|1+7PWO|1|42:8BSJ|1|Lt+8BSJ|1|LD = 0.04767PWO|1|1+7PWO|1|42:7PWG|1|1+7PWG|1|4 = 0.00697PWO|1|1+7PWO|1|42:7PWO|1|1+7PWO|1|42 = 07PWO|1|1+7PWO|1|42:8FRU|1|1+8FRU|1|4 = 0.03377PWO|1|1+7PWO|1|42:8BRM|1|Lt+8BRM|1|LD = 0.04718FRU|1|1+8FRU|1|4:8BTD|1|Lt+8BTD|1|LD = 0.04698FRU|1|1+8FRU|1|4:8BTR|1|Lt+8BTR|1|LD = 0.04708FRU|1|1+8FRU|1|4:8BSI|1|Lt+8BSI|1|LD = 0.04408FRU|1|1+8FRU|1|4:8BR8|1|Lt+8BR8|1|LD = 0.04348FRU|1|1+8FRU|1|4:8BSJ|1|Lt+8BSJ|1|LD = 0.04448FRU|1|1+8FRU|1|4:7PWG|1|1+7PWG|1|4 = 0.03358FRU|1|1+8FRU|1|4:7PWO|1|1+7PWO|1|42 = 0.03378FRU|1|1+8FRU|1|4:8FRU|1|1+8FRU|1|4 = 08FRU|1|1+8FRU|1|4:8BRM|1|Lt+8BRM|1|LD = 0.04388BRM|1|Lt+8BRM|1|LD:8BTD|1|Lt+8BTD|1|LD = 0.10458BRM|1|Lt+8BRM|1|LD:8BTR|1|Lt+8BTR|1|LD = 0.10228BRM|1|Lt+8BRM|1|LD:8BSI|1|Lt+8BSI|1|LD = 0.09598BRM|1|Lt+8BRM|1|LD:8BR8|1|Lt+8BR8|1|LD = 0.09478BRM|1|Lt+8BRM|1|LD:8BSJ|1|Lt+8BSJ|1|LD = 0.09128BRM|1|Lt+8BRM|1|LD:7PWG|1|1+7PWG|1|4 = 0.04678BRM|1|Lt+8BRM|1|LD:7PWO|1|1+7PWO|1|42 = 0.04718BRM|1|Lt+8BRM|1|LD:8FRU|1|1+8FRU|1|4 = 0.04388BRM|1|Lt+8BRM|1|LD:8BRM|1|Lt+8BRM|1|LD = 08BTD|1|Lt+8BTD|1|LD8BTR|1|Lt+8BTR|1|LD8BSI|1|Lt+8BSI|1|LD8BR8|1|Lt+8BR8|1|LD8BSJ|1|Lt+8BSJ|1|LD7PWG|1|1+7PWG|1|47PWO|1|1+7PWO|1|428FRU|1|1+8FRU|1|48BRM|1|Lt+8BRM|1|LDDiscrepancy0.000.020.040.060.080.10

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