Equivalence class NR_all_01039.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6HMO|1|B+ 6HMO|1|A (rep) | RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier | Solution NMR | 11 | 2019-08-14 | ||||
| 2 | 8CF2|1|B+ 8CF2|1|A | RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | synthetic construct | Solution structure of the RNA helix formed by the 5'-end of U1 snRNA and an A-1 bulged 5'-splice site in complex with SMN-CY | Solution NMR | 11 | 2024-02-21 | ||||
| 3 | 5OR0|1|B+ 5OR0|1|A | RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | NMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNA | Solution NMR | 11 | 2017-08-30 | ||||
| 4 | 6HMI|1|B+ 6HMI|1|A | RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 | Solution NMR | 11 | 2019-08-14 | ||||
| 5 | 8R8P|1|B+ 8R8P|1|A | RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition | Solid-state NMR | 11 | 2024-03-06 | ||||
| 6 | 8R63|1|B+ 8R63|1|A | RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | Solution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognition | Solution NMR | 11 | 2024-03-06 | ||||
| 7 | 8R62|1|B+ 8R62|1|A | RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') | Homo sapiens | Solution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognition | Solution NMR | 11 | 2024-03-06 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5OR0|1|B+ 5OR0|1|A | NMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNA | SOLUTION NMR | 11 | ||
| 2 | 8R62|1|B+ 8R62|1|A | Solution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognition | SOLUTION NMR | 11 | ||
| 3 | 6HMO|1|B+ 6HMO|1|A | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier | SOLUTION NMR | 11 | ||
| 4 | 8R63|1|B+ 8R63|1|A | Solution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognition | SOLUTION NMR | 11 | ||
| 5 | 8CF2|1|B+ 8CF2|1|A | Solution structure of the RNA helix formed by the 5'-end of U1 snRNA and an A-1 bulged 5'-splice site in complex with SMN-CY | SOLUTION NMR | 11 | ||
| 6 | 6HMI|1|B+ 6HMI|1|A | Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 | SOLUTION NMR | 11 | ||
| 7 | 8R8P|1|B+ 8R8P|1|A | Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition | SOLID-STATE NMR | 11 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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