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Equivalence class NR_all_01039.2 Obsolete

Showing 1 to 6 of 6 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15OR0|1|B+ 5OR0|1|A (rep)RNA (5'-R(P*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensNMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNASolution NMR112017-08-30
26HMO|1|B+ 6HMO|1|ARNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensSolution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifierSolution NMR112019-08-14
36HMI|1|B+ 6HMI|1|ARNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensSolution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7Solution NMR112019-08-14
48R63|1|B+ 8R63|1|ARNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensSolution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognitionSolution NMR112024-03-06
58R8P|1|B+ 8R8P|1|ARNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensSolution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognitionSolid-state NMR112024-03-06
68R62|1|B+ 8R62|1|ARNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')Homo sapiensSolution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognitionSolution NMR112024-03-06

Release history

Release3.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 6 of 6 entries
#SViewPDBTitleMethodResolution#NTs
16HMI|1|B+ 6HMI|1|ASolution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7SOLUTION NMR11
26HMO|1|B+ 6HMO|1|ASolution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifierSOLUTION NMR11
38R63|1|B+ 8R63|1|ASolution structure of branaplam bound to the RNA duplex formed upon 5'-splice site recognitionSOLUTION NMR11
48R62|1|B+ 8R62|1|ASolution structure of Risdiplam bound to the RNA duplex formed upon 5'-splice site recognitionSOLUTION NMR11
55OR0|1|B+ 5OR0|1|ANMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNASOLUTION NMR11
68R8P|1|B+ 8R8P|1|ASolution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognitionSOLID-STATE NMR11

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

6HMI|1|B+6HMI|1|A:6HMI|1|B+6HMI|1|A = 06HMI|1|B+6HMI|1|A:6HMO|1|B+6HMO|1|A = 0.71676HMI|1|B+6HMI|1|A:8R63|1|B+8R63|1|A = 0.71466HMI|1|B+6HMI|1|A:8R62|1|B+8R62|1|A = 0.96546HMI|1|B+6HMI|1|A:5OR0|1|B+5OR0|1|A = 1.01806HMI|1|B+6HMI|1|A:8R8P|1|B+8R8P|1|A not available6HMO|1|B+6HMO|1|A:6HMI|1|B+6HMI|1|A = 0.71676HMO|1|B+6HMO|1|A:6HMO|1|B+6HMO|1|A = 06HMO|1|B+6HMO|1|A:8R63|1|B+8R63|1|A = 0.31136HMO|1|B+6HMO|1|A:8R62|1|B+8R62|1|A = 0.54336HMO|1|B+6HMO|1|A:5OR0|1|B+5OR0|1|A = 0.56726HMO|1|B+6HMO|1|A:8R8P|1|B+8R8P|1|A not available8R63|1|B+8R63|1|A:6HMI|1|B+6HMI|1|A = 0.71468R63|1|B+8R63|1|A:6HMO|1|B+6HMO|1|A = 0.31138R63|1|B+8R63|1|A:8R63|1|B+8R63|1|A = 08R63|1|B+8R63|1|A:8R62|1|B+8R62|1|A = 0.51188R63|1|B+8R63|1|A:5OR0|1|B+5OR0|1|A = 0.56088R63|1|B+8R63|1|A:8R8P|1|B+8R8P|1|A not available8R62|1|B+8R62|1|A:6HMI|1|B+6HMI|1|A = 0.96548R62|1|B+8R62|1|A:6HMO|1|B+6HMO|1|A = 0.54338R62|1|B+8R62|1|A:8R63|1|B+8R63|1|A = 0.51188R62|1|B+8R62|1|A:8R62|1|B+8R62|1|A = 08R62|1|B+8R62|1|A:5OR0|1|B+5OR0|1|A = 0.40838R62|1|B+8R62|1|A:8R8P|1|B+8R8P|1|A not available5OR0|1|B+5OR0|1|A:6HMI|1|B+6HMI|1|A = 1.01805OR0|1|B+5OR0|1|A:6HMO|1|B+6HMO|1|A = 0.56725OR0|1|B+5OR0|1|A:8R63|1|B+8R63|1|A = 0.56085OR0|1|B+5OR0|1|A:8R62|1|B+8R62|1|A = 0.40835OR0|1|B+5OR0|1|A:5OR0|1|B+5OR0|1|A = 05OR0|1|B+5OR0|1|A:8R8P|1|B+8R8P|1|A not available8R8P|1|B+8R8P|1|A:6HMI|1|B+6HMI|1|A not available8R8P|1|B+8R8P|1|A:6HMO|1|B+6HMO|1|A not available8R8P|1|B+8R8P|1|A:8R63|1|B+8R63|1|A not available8R8P|1|B+8R8P|1|A:8R62|1|B+8R62|1|A not available8R8P|1|B+8R8P|1|A:5OR0|1|B+5OR0|1|A not available8R8P|1|B+8R8P|1|A:8R8P|1|B+8R8P|1|A = 06HMI|1|B+6HMI|1|A6HMO|1|B+6HMO|1|A8R63|1|B+8R63|1|A8R62|1|B+8R62|1|A5OR0|1|B+5OR0|1|A8R8P|1|B+8R8P|1|ADiscrepancy0.000.200.400.600.801.00

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