Equivalence class NR_all_01175.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1FQZ|1|A (rep) | HEPATITIS C VIRUS IRES DOMAIN IIID | NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE | Solution NMR | 27 | 2001-01-17 | |||||
| 2 | 1F84|10|A | HCV-1B IRES RNA DOMAIN IIID | SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID | Solution NMR | 29 | 2000-11-17 | |||||
| 3 | 2AGN|1|A | HCV-1B IRES RNA SUB-DOMAIN IIID | Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex | Electron microscopy | 15 | 28 | 2006-07-25 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_01175.2 | NR_all_01175.1 | 2.93 | (2) 1F84|10|A, 2AGN|1|A | (1) 1FQZ|1|A | (0) |
| NR_all_01175.2 | NR_all_28302.1 | 2.93 | (1) 1FQZ|1|A | (2) 1F84|10|A, 2AGN|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_01175.2 | NR_all_18069.1 | 2.120 | (1) 1FQZ|1|A | (2) 1F84|10|A, 2AGN|1|A | (0) |
| NR_all_01175.2 | NR_all_34881.1 | 2.120 | (1) 1F84|10|A | (2) 1FQZ|1|A, 2AGN|1|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1FQZ|1|A | NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE | SOLUTION NMR | 27 | ||
| 2 | 1F84|10|A | SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID | SOLUTION NMR | 29 | ||
| 3 | 2AGN|1|A | Fitting of hepatitis C virus internal ribosome entry site domains into the 15 A Cryo-EM map of a HCV IRES-80S ribosome (H. sapiens) complex | ELECTRON MICROSCOPY | 15 | 28 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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