Equivalence class NR_all_02142.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V8N|1|CV (rep) | Transfer RNA | E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE, MRNA | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 2 | 4V8N|1|AY | Transfer RNA | E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE, MRNA | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 3 | 4V8N|1|AV | Transfer RNA | E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE, MRNA | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 4 | 4V8N|1|CY | Transfer RNA | E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE, MRNA | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 5 | 4V8N|1|AW | Transfer RNA | A-SITE TRNA ILE2 AGMATIDINE | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 6 | 4V8N|1|CW | Transfer RNA | A-SITE TRNA ILE2 AGMATIDINE | Haloarcula marismortui | Archaea | RF00005 | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-ray diffraction | 3.1 | 78 | 2014-07-09 |
| 7 | 8HTZ|1|X | Transfer RNA | A-site tRNA_Ile2, mRNA | Haloarcula marismortui | Archaea | RF00005 | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | Electron microscopy | 2.4 | 78 | 2024-04-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 8HTZ|1|X | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | ELECTRON MICROSCOPY | 2.4 | 78 | |
| 2 | 4V8N|1|CY | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 | |
| 3 | 4V8N|1|AY | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 | |
| 4 | 4V8N|1|AV | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 | |
| 5 | 4V8N|1|CV | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 | |
| 6 | 4V8N|1|CW | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 | |
| 7 | 4V8N|1|AW | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | X-RAY DIFFRACTION | 3.1 | 78 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: