RNA 3D Hub //

Equivalence class NR_all_02457.2 Current

Showing 1 to 13 of 13 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19J9H|1|B (rep)5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNAElectron microscopy2.451182025-06-04
29J9I|1|B5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNAElectron microscopy2.461182025-06-04
39BUQ|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)Electron microscopy2.31182025-05-28
49BUS|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)Electron microscopy2.41182025-05-28
59BUP|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)Electron microscopy2.71182025-05-28
63J79|1|B5S ribosomal RNA5S ribosomal RNAPlasmodium falciparumEukaryaRF00001Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunitElectron microscopy3.21182014-07-16
75UMD|1|B5S ribosomal RNA5S ribosomal RNAPlasmodium falciparumEukaryaRF00001Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquineElectron microscopy3.21182017-03-01
89BUT|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)Electron microscopy2.81182025-05-28
99BUU|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNAElectron microscopy2.81182025-05-28
108TPU|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF00001Subtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytesElectron microscopy4.11182024-08-14
113JBN|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparumEukaryaRF00001Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNAElectron microscopy4.71182015-10-14
123JBO|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparumEukaryaRF00001Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNAElectron microscopy5.81182015-10-14
133JBP|1|AB5S ribosomal RNA5S ribosomal RNAPlasmodium falciparumEukaryaRF00001Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNAElectron microscopy6.71182015-10-14

Release history

Release3.3903.3913.392
Date2025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 13 of 13 entries
#SViewPDBTitleMethodResolution#NTs
13JBO|1|ABCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNAELECTRON MICROSCOPY5.8118
23JBN|1|ABCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNAELECTRON MICROSCOPY4.7118
33JBP|1|ABCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNAELECTRON MICROSCOPY6.7118
43J79|1|BCryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunitELECTRON MICROSCOPY3.2118
55UMD|1|BStructure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquineELECTRON MICROSCOPY3.2118
69BUP|1|ABSingle particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)ELECTRON MICROSCOPY2.7118
79BUQ|1|ABSingle particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)ELECTRON MICROSCOPY2.3118
89BUS|1|ABSingle particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)ELECTRON MICROSCOPY2.4118
98TPU|1|ABSubtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytesELECTRON MICROSCOPY4.1118
109J9I|1|BHigh-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNAELECTRON MICROSCOPY2.46118
119J9H|1|BHigh-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNAELECTRON MICROSCOPY2.45118
129BUT|1|ABSingle particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)ELECTRON MICROSCOPY2.8118
139BUU|1|ABSingle particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNAELECTRON MICROSCOPY2.8118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

3JBO|1|AB:3JBO|1|AB = 03JBO|1|AB:3JBN|1|AB = 0.05013JBO|1|AB:3JBP|1|AB = 0.05413JBO|1|AB:3J79|1|B = 0.08053JBO|1|AB:5UMD|1|B = 0.08003JBO|1|AB:9BUP|1|AB = 0.07853JBO|1|AB:9BUQ|1|AB = 0.08223JBO|1|AB:9BUS|1|AB = 0.08203JBO|1|AB:8TPU|1|AB = 0.07423JBO|1|AB:9J9I|1|B = 0.11163JBO|1|AB:9J9H|1|B = 0.11413JBO|1|AB:9BUT|1|AB = 0.16863JBO|1|AB:9BUU|1|AB = 0.16963JBN|1|AB:3JBO|1|AB = 0.05013JBN|1|AB:3JBN|1|AB = 03JBN|1|AB:3JBP|1|AB = 0.05313JBN|1|AB:3J79|1|B = 0.08653JBN|1|AB:5UMD|1|B = 0.08663JBN|1|AB:9BUP|1|AB = 0.08283JBN|1|AB:9BUQ|1|AB = 0.08623JBN|1|AB:9BUS|1|AB = 0.08523JBN|1|AB:8TPU|1|AB = 0.08013JBN|1|AB:9J9I|1|B = 0.11593JBN|1|AB:9J9H|1|B = 0.11853JBN|1|AB:9BUT|1|AB = 0.16933JBN|1|AB:9BUU|1|AB = 0.17023JBP|1|AB:3JBO|1|AB = 0.05413JBP|1|AB:3JBN|1|AB = 0.05313JBP|1|AB:3JBP|1|AB = 03JBP|1|AB:3J79|1|B = 0.07623JBP|1|AB:5UMD|1|B = 0.07533JBP|1|AB:9BUP|1|AB = 0.06883JBP|1|AB:9BUQ|1|AB = 0.07373JBP|1|AB:9BUS|1|AB = 0.07293JBP|1|AB:8TPU|1|AB = 0.07163JBP|1|AB:9J9I|1|B = 0.10683JBP|1|AB:9J9H|1|B = 0.10823JBP|1|AB:9BUT|1|AB = 0.17213JBP|1|AB:9BUU|1|AB = 0.17313J79|1|B:3JBO|1|AB = 0.08053J79|1|B:3JBN|1|AB = 0.08653J79|1|B:3JBP|1|AB = 0.07623J79|1|B:3J79|1|B = 03J79|1|B:5UMD|1|B = 0.02303J79|1|B:9BUP|1|AB = 0.07043J79|1|B:9BUQ|1|AB = 0.07423J79|1|B:9BUS|1|AB = 0.07553J79|1|B:8TPU|1|AB = 0.09243J79|1|B:9J9I|1|B = 0.14803J79|1|B:9J9H|1|B = 0.15103J79|1|B:9BUT|1|AB = 0.18723J79|1|B:9BUU|1|AB = 0.18735UMD|1|B:3JBO|1|AB = 0.08005UMD|1|B:3JBN|1|AB = 0.08665UMD|1|B:3JBP|1|AB = 0.07535UMD|1|B:3J79|1|B = 0.02305UMD|1|B:5UMD|1|B = 05UMD|1|B:9BUP|1|AB = 0.06885UMD|1|B:9BUQ|1|AB = 0.07335UMD|1|B:9BUS|1|AB = 0.07585UMD|1|B:8TPU|1|AB = 0.09175UMD|1|B:9J9I|1|B = 0.14625UMD|1|B:9J9H|1|B = 0.14895UMD|1|B:9BUT|1|AB = 0.18725UMD|1|B:9BUU|1|AB = 0.18759BUP|1|AB:3JBO|1|AB = 0.07859BUP|1|AB:3JBN|1|AB = 0.08289BUP|1|AB:3JBP|1|AB = 0.06889BUP|1|AB:3J79|1|B = 0.07049BUP|1|AB:5UMD|1|B = 0.06889BUP|1|AB:9BUP|1|AB = 09BUP|1|AB:9BUQ|1|AB = 0.03799BUP|1|AB:9BUS|1|AB = 0.04139BUP|1|AB:8TPU|1|AB = 0.07059BUP|1|AB:9J9I|1|B = 0.12839BUP|1|AB:9J9H|1|B = 0.13089BUP|1|AB:9BUT|1|AB = 0.17179BUP|1|AB:9BUU|1|AB = 0.17209BUQ|1|AB:3JBO|1|AB = 0.08229BUQ|1|AB:3JBN|1|AB = 0.08629BUQ|1|AB:3JBP|1|AB = 0.07379BUQ|1|AB:3J79|1|B = 0.07429BUQ|1|AB:5UMD|1|B = 0.07339BUQ|1|AB:9BUP|1|AB = 0.03799BUQ|1|AB:9BUQ|1|AB = 09BUQ|1|AB:9BUS|1|AB = 0.01669BUQ|1|AB:8TPU|1|AB = 0.06659BUQ|1|AB:9J9I|1|B = 0.12939BUQ|1|AB:9J9H|1|B = 0.13189BUQ|1|AB:9BUT|1|AB = 0.16999BUQ|1|AB:9BUU|1|AB = 0.17019BUS|1|AB:3JBO|1|AB = 0.08209BUS|1|AB:3JBN|1|AB = 0.08529BUS|1|AB:3JBP|1|AB = 0.07299BUS|1|AB:3J79|1|B = 0.07559BUS|1|AB:5UMD|1|B = 0.07589BUS|1|AB:9BUP|1|AB = 0.04139BUS|1|AB:9BUQ|1|AB = 0.01669BUS|1|AB:9BUS|1|AB = 09BUS|1|AB:8TPU|1|AB = 0.06379BUS|1|AB:9J9I|1|B = 0.12759BUS|1|AB:9J9H|1|B = 0.13009BUS|1|AB:9BUT|1|AB = 0.16879BUS|1|AB:9BUU|1|AB = 0.16898TPU|1|AB:3JBO|1|AB = 0.07428TPU|1|AB:3JBN|1|AB = 0.08018TPU|1|AB:3JBP|1|AB = 0.07168TPU|1|AB:3J79|1|B = 0.09248TPU|1|AB:5UMD|1|B = 0.09178TPU|1|AB:9BUP|1|AB = 0.07058TPU|1|AB:9BUQ|1|AB = 0.06658TPU|1|AB:9BUS|1|AB = 0.06378TPU|1|AB:8TPU|1|AB = 08TPU|1|AB:9J9I|1|B = 0.10118TPU|1|AB:9J9H|1|B = 0.10338TPU|1|AB:9BUT|1|AB = 0.15668TPU|1|AB:9BUU|1|AB = 0.15739J9I|1|B:3JBO|1|AB = 0.11169J9I|1|B:3JBN|1|AB = 0.11599J9I|1|B:3JBP|1|AB = 0.10689J9I|1|B:3J79|1|B = 0.14809J9I|1|B:5UMD|1|B = 0.14629J9I|1|B:9BUP|1|AB = 0.12839J9I|1|B:9BUQ|1|AB = 0.12939J9I|1|B:9BUS|1|AB = 0.12759J9I|1|B:8TPU|1|AB = 0.10119J9I|1|B:9J9I|1|B = 09J9I|1|B:9J9H|1|B = 0.02049J9I|1|B:9BUT|1|AB = 0.16559J9I|1|B:9BUU|1|AB = 0.16859J9H|1|B:3JBO|1|AB = 0.11419J9H|1|B:3JBN|1|AB = 0.11859J9H|1|B:3JBP|1|AB = 0.10829J9H|1|B:3J79|1|B = 0.15109J9H|1|B:5UMD|1|B = 0.14899J9H|1|B:9BUP|1|AB = 0.13089J9H|1|B:9BUQ|1|AB = 0.13189J9H|1|B:9BUS|1|AB = 0.13009J9H|1|B:8TPU|1|AB = 0.10339J9H|1|B:9J9I|1|B = 0.02049J9H|1|B:9J9H|1|B = 09J9H|1|B:9BUT|1|AB = 0.16459J9H|1|B:9BUU|1|AB = 0.16739BUT|1|AB:3JBO|1|AB = 0.16869BUT|1|AB:3JBN|1|AB = 0.16939BUT|1|AB:3JBP|1|AB = 0.17219BUT|1|AB:3J79|1|B = 0.18729BUT|1|AB:5UMD|1|B = 0.18729BUT|1|AB:9BUP|1|AB = 0.17179BUT|1|AB:9BUQ|1|AB = 0.16999BUT|1|AB:9BUS|1|AB = 0.16879BUT|1|AB:8TPU|1|AB = 0.15669BUT|1|AB:9J9I|1|B = 0.16559BUT|1|AB:9J9H|1|B = 0.16459BUT|1|AB:9BUT|1|AB = 09BUT|1|AB:9BUU|1|AB = 0.05639BUU|1|AB:3JBO|1|AB = 0.16969BUU|1|AB:3JBN|1|AB = 0.17029BUU|1|AB:3JBP|1|AB = 0.17319BUU|1|AB:3J79|1|B = 0.18739BUU|1|AB:5UMD|1|B = 0.18759BUU|1|AB:9BUP|1|AB = 0.17209BUU|1|AB:9BUQ|1|AB = 0.17019BUU|1|AB:9BUS|1|AB = 0.16899BUU|1|AB:8TPU|1|AB = 0.15739BUU|1|AB:9J9I|1|B = 0.16859BUU|1|AB:9J9H|1|B = 0.16739BUU|1|AB:9BUT|1|AB = 0.05639BUU|1|AB:9BUU|1|AB = 03JBO|1|AB3JBN|1|AB3JBP|1|AB3J79|1|B5UMD|1|B9BUP|1|AB9BUQ|1|AB9BUS|1|AB8TPU|1|AB9J9I|1|B9J9H|1|B9BUT|1|AB9BUU|1|ABDiscrepancy0.000.050.100.15

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